miRBase entry: nbr-mir-99a

Stem-loop nbr-mir-99a

Accession

MI0034504

Description

Neolamprologus brichardi nbr-mir-99a precursor miRNA

Sequence

AGACCUGUAGAUACAAGCUUGUggugucacuuaacacaaguucggaucuacggguuugg
(((((((((((..(.((((((((...........)))))))).)..)))))))))))..

Structure

--           UA A        gugu 
  AGACCUGUAGA  C AGCUUGUg    c
  |||||||||||  | ||||||||    a
  uuugggcaucu  g uugaacac    c
gg           ag c        aauu

Annotation confidence Not enough data

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Genome context

JH422335.1: 3458748-3458806 [-]

Clustered miRNAs

3 other miRNAs are < 10 kb from nbr-mir-99a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature nbr-miR-99a

Accession	MIMAT0042626
Description	Neolamprologus brichardi nbr-miR-99a mature miRNA
Sequence	1 - AGACCUGUAGAUACAAGCUUGU - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381