miRBase entry: oni-mir-23b

Stem-loop oni-mir-23b

Accession

MI0034627

Description

Oreochromis niloticus oni-mir-23b precursor miRNA

Literature search

1 open access papers mention oni-mir-23b
(3 sentences)

Sequence

ggguuccuggcgugcugauuugugacuuaugauaaaAUCACAUUGCCAGGGAUUACC
.(((((((((((((.((((((.............)))))))).)))))))))))...

Structure

--g           -  c      gugac 
   gguuccuggcg ug ugauuu     u
   ||||||||||| || ||||||     u
   UUAGGGACCGU AC ACUAaa     a
CCA           U  -      auagu

Annotation confidence Not enough data

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Genome context

CM001455.1: 20336033-20336089 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from oni-mir-23b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-23b

Accession	MIMAT0042713
Description	Oreochromis niloticus oni-miR-23b mature miRNA
Sequence	37 - AUCACAUUGCCAGGGAUUACC - 57
Evidence	experimental Illumina [1-2]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774