miRBase entry: pny-mir-30c

Stem-loop pny-mir-30c

Accession

MI0034819

Description

Pundamilia nyererei pny-mir-30c precursor miRNA

Sequence

UGUAAACAUCCUACACUCUCGGCaucugcccucugguggccgggagugggacuguuugcacu
(((((((((((..(((((((((((((........))).))))))))))))).))))))))..

Structure

--        -   UA          -   ugc 
  UGUAAACA UCC  CACUCUCGGC auc   c
  |||||||| |||  |||||||||| |||    
  acguuugu agg  gugagggccg ugg   c
uc        c   --          g   ucu

Annotation confidence Not enough data

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Genome context

JH419373.1: 137271-137332 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-30c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-30c

Accession	MIMAT0042869
Description	Pundamilia nyererei pny-miR-30c mature miRNA
Sequence	1 - UGUAAACAUCCUACACUCUCGGC - 23
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381