miRBase entry: pny-mir-214-1

Stem-loop pny-mir-214-1

Accession

MI0034838

Description

Pundamilia nyererei pny-mir-214-1 precursor miRNA

Sequence

ugccugucuacacuugcugugcagaccuucugcuccuguACAGCAGGCACAGACAGGCAGA
(((((((((...((((((((((((...........))))))))))))...)))))))))..

Structure

--         aca            accu 
  ugccugucu   cuugcugugcag    u
  |||||||||   ||||||||||||    c
  ACGGACAGA   GGACGACAuguc    u
AG         CAC            cucg

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

JH419251.1: 673474-673534 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-214-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-214

Accession	MIMAT0042880
Description	Pundamilia nyererei pny-miR-214 mature miRNA
Sequence	40 - ACAGCAGGCACAGACAGGCAGA - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381