miRBase entry: pny-mir-17-1

Stem-loop pny-mir-17-1

Accession

MI0034857

Description

Pundamilia nyererei pny-mir-17-1 precursor miRNA

Sequence

CAAAGUGCUUACAGUGCAGGUAguacuauggaauaccuacugcaguggaggcacuuacagca
..(((((((..((.(((((...(((........)))...))))).))..)))))))......

Structure

----CA       UA  G     GUA   cua 
      AAGUGCU  CA UGCAG   gua   u
      |||||||  || |||||   |||    
      uucacgg  gu acguc   cau   g
acgaca       ag  g     auc   aag

Annotation confidence Not enough data

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Genome context

JH419216.1: 2882322-2882383 [+]

Clustered miRNAs

4 other miRNAs are < 10 kb from pny-mir-17-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-17

Accession	MIMAT0042893
Description	Pundamilia nyererei pny-miR-17 mature miRNA
Sequence	1 - CAAAGUGCUUACAGUGCAGGUA - 22
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381