miRBase entry: pny-mir-27e-1

Stem-loop pny-mir-27e-1

Accession

MI0034897

Description

Pundamilia nyererei pny-mir-27e-1 precursor miRNA

Sequence

agagcuuagcuaauuggugagcauugaucccugcuauguguugUUCACAGUGGCUAAGUUCAGU
.(((((((((((....(((((((..................)))))))..)))))))))))...

Structure

--a           auug       uugauccc 
   gagcuuagcua    gugagca        u
   |||||||||||    |||||||         
   CUUGAAUCGGU    CACUUgu        g
UGA           --GA       uguguauc

Annotation confidence Not enough data

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Genome context

JH419388.1: 1078837-1078900 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-27e-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-27e

Accession	MIMAT0042919
Description	Pundamilia nyererei pny-miR-27e mature miRNA
Sequence	44 - UUCACAGUGGCUAAGUUCAGU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381