miRBase entry: pny-mir-24a-1

Stem-loop pny-mir-24a-1

Accession

MI0034915

Description

Pundamilia nyererei pny-mir-24a-1 precursor miRNA

Sequence

ugccuacugagcugauaaucaguccuacagaaucacUGGCUCAGUUCAGCAGGAACAG
..(((.(((((((((...(((((...........))))).))))))))).))).....

Structure

---ug   a         uaa     ccua 
     ccu cugagcuga   ucagu    c
     ||| |||||||||   |||||    a
     GGA GACUUGACU   GGUca    g
GACAA   C         --C     cuaa

Annotation confidence Not enough data

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Genome context

JH419211.1: 114903-114960 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-24a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-24a

Accession	MIMAT0042935
Description	Pundamilia nyererei pny-miR-24a mature miRNA
Sequence	37 - UGGCUCAGUUCAGCAGGAACAG - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381