miRBase entry: pny-mir-29a-2

Stem-loop pny-mir-29a-2

Accession

MI0034970

Description

Pundamilia nyererei pny-mir-29a-2 precursor miRNA

Sequence

accgauuucuuucgguguucagagucugcuucuguuucUAGCACCAUUUGAAAUCGGUUA
(((((((((....((((((.((((...((....))))))))))))....)))))))))..

Structure

--         uuuc      c    ucu  u 
  accgauuuc    gguguu agag   gc u
  |||||||||    |||||| ||||   ||  
  UGGCUAAAG    CCACGA Ucuu   ug c
AU         UUUA      -    ---  u

Annotation confidence Not enough data

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Genome context

JH419440.1: 754279-754338 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-29a-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-29a

Accession	MIMAT0042954
Description	Pundamilia nyererei pny-miR-29a mature miRNA
Sequence	39 - UAGCACCAUUUGAAAUCGGUUA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381