miRBase entry: pny-mir-19c

Stem-loop pny-mir-19c

Accession

MI0034994

Description

Pundamilia nyererei pny-mir-19c precursor miRNA

Sequence

aguuuugaugguuuguucucagcuucugaaagacucugcUGUGCAAAUCCAUGCAAAGCUCU
((((((((((((((((...((((..............)))).))))).)))).)))))))..

Structure

--       -    -     ucu    uucuga 
  aguuuug augg uuugu   cagc      a
  ||||||| |||| |||||   ||||       
  UCGAAAC UACC AAACG   GUcg      a
UC       G    U     --U    ucucag

Annotation confidence Not enough data

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Genome context

JH419206.1: 4457131-4457192 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from pny-mir-19c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-19c

Accession	MIMAT0042989
Description	Pundamilia nyererei pny-miR-19c mature miRNA
Sequence	40 - UGUGCAAAUCCAUGCAAAGCUCU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381