miRBase entry: pny-mir-15c

Stem-loop pny-mir-15c

Accession

MI0035022

Description

Pundamilia nyererei pny-mir-15c precursor miRNA

Sequence

UAGCAGCACAUCAUGUUUUGCAgaugugcugaaucgcuuCAAAUCAUCAUGUGCUGCCACC
..(((((((((.(((.((((.((.((........)))).)))).))).)))))))))....

Structure

--UA         C   U    C  a  ugc 
    GCAGCACAU AUG UUUG Ag ug   u
    ||||||||| ||| |||| || ||    
    CGUCGUGUA UAC AAAC uc gc   g
CCAC         C   U    u  -  uaa

Annotation confidence Not enough data

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Genome context

JH419598.1: 327866-327926 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from pny-mir-15c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature pny-miR-15c-5p

Accession	MIMAT0043019
Description	Pundamilia nyererei pny-miR-15c-5p mature miRNA
Sequence	1 - UAGCAGCACAUCAUGUUUUGCA - 22
Evidence	experimental Illumina [1]

Mature pny-miR-15c-3p

Accession	MIMAT0043020
Description	Pundamilia nyererei pny-miR-15c-3p mature miRNA
Sequence	40 - CAAAUCAUCAUGUGCUGCCACC - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 25186727
The genomic substrate for adaptive radiation in African cichlid fish
"Brawand D, Wagner CE, Li YI, Malinsky M, Keller I, Fan S, Simakov O, Ng AY, Lim ZW, Bezault E, Turner-Maier J, Johnson J, Alcazar R, Noh HJ, Russell P, Aken B, Alfoldi J, Amemiya C, Azzouzi N, Baroiller JF, Barloy-Hubler F, Berlin A, Bloomquist R, Carleto"
"Nature (2014) 513:375-381