miRBase entry: oni-mir-10869

Stem-loop oni-mir-10869

Accession

MI0035428

Description

Oreochromis niloticus oni-mir-10869 precursor miRNA

Sequence

aaguccaggccucagggccagaguccugcagguuugagaugaugauccaucacagcugauuuauaggACCUCCUCAGGCCUGGACUUCC
((((((((((((.(((...((.((((((.(((((.(...(((((...)))))...).))))).))))))))))).))))))))))))..

Structure

--            c   gcc  a      c     u aga     a 
  aaguccaggccu agg   ag guccug agguu g   ugaug  
  |||||||||||| |||   || |||||| ||||| |   ||||| u
  UUCAGGUCCGGA UCC   UC CAggau uuuag c   acuac  
CC            C   ---  -      a     u gac     c

Annotation confidence Not enough data

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Genome context

CM001455.1: 33639507-33639595 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from oni-mir-10869

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature oni-miR-10869

Accession	MIMAT0043391
Description	Oreochromis niloticus oni-miR-10869 mature miRNA
Sequence	68 - ACCUCCUCAGGCCUGGACUUCC - 89
Evidence	experimental Illumina [1]

References

PubMed ID: 25199625
Identification of male-specific amh duplication, sexually differentially expressed genes and microRNAs at early embryonic development of Nile tilapia (Oreochromis niloticus)
Eshel O, Shirak A, Dor L, Band M, Zak T, Markovich-Gordon M, Chalifa-Caspi V, Feldmesser E, Weller JI, Seroussi E, Hulata G, Ron M
BMC Genomics (2014) 15:774