miRBase entry: gmo-mir-429

Stem-loop gmo-mir-429

Accession

MI0036046

Description

Gadus morhua gmo-mir-429 precursor miRNA

Literature search

1 open access papers mention gmo-mir-429
(1 sentences)

Sequence

GUCUUACCAGACACGGUUAGAuuuaaugaucugugucUAAUACUGUCUGGUAAUGCCGU
((.((((((((((..(((((((.((......)).)))))))..)))))))))).))...

Structure

---  C          CG       u  au 
   GU UUACCAGACA  GUUAGAu ua  g
   || ||||||||||  ||||||| ||   
   CG AAUGGUCUGU  UAAUcug gu  a
UGC  U          CA       u  cu

Annotation confidence Not enough data

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Genome context

HE571528.1: 74829-74887 [+]

Clustered miRNAs

3 other miRNAs are < 10 kb from gmo-mir-429

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-429-5p

Accession	MIMAT0044107
Description	Gadus morhua gmo-miR-429-5p mature miRNA
Sequence	1 - GUCUUACCAGACACGGUUAGA - 21
Evidence	experimental SOLiD [1], Illumina [2]

Mature gmo-miR-429-3p

Accession	MIMAT0044108
Description	Gadus morhua gmo-miR-429-3p mature miRNA
Sequence	38 - UAAUACUGUCUGGUAAUGCCGU - 59
Evidence	experimental SOLiD [1], Illumina [2]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305

PubMed ID: 27128807
Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
PLoS One (2016) 11:e0153324