miRBase entry: gmo-mir-103-1

Stem-loop gmo-mir-103-1


Accession
MI0036107
Description
Gadus morhua gmo-mir-103-1 precursor miRNA

Literature search
1 open access papers mention gmo-mir-103-1
(2 sentences)

Sequence

AGCCUCUUUACGGUGCUGCcuuguggcgucuugaucaAGCAGCAUUGUACAGGGCUAUGA
((((.((.(((((((((((.(((............)))))))))))))).))))))....

Structure
----    U  U           c   uggcg 
    AGCC CU UACGGUGCUGC uug     u
    |||| || ||||||||||| |||      
    UCGG GA AUGUUACGACG Aac     c
AGUA    -  C           -   uaguu 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
CAEA01397895.1: 1375-1434 [+]

Database links

Mature gmo-miR-103-3p

Accession MIMAT0044050
Description Gadus morhua gmo-miR-103-3p mature miRNA
Sequence 38 - AGCAGCAUUGUACAGGGCUAUGA - 60
Evidence experimental
SOLiD [1]

Mature gmo-miR-103-5p

Accession MIMAT0044189
Description Gadus morhua gmo-miR-103-5p mature miRNA
Sequence 1 - AGCCUCUUUACGGUGCUGC - 19
Evidence experimental
Illumina [2]

References

  1. PubMed ID: 25881242
    Temperature during early development has long-term effects on microRNA expression in Atlantic cod
    Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
    BMC Genomics (2015) 16:305

  2. PubMed ID: 27128807
    Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
    Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
    PLoS One (2016) 11:e0153324