miRBase entry: gmo-mir-216a

Stem-loop gmo-mir-216a

Accession

MI0036224

Description

Gadus morhua gmo-mir-216a precursor miRNA

Sequence

AAAUCUCAGCUGGCAACUGUGAgucuuucacuaucugcacUCACAAUGGCCGCUGGGAUUAUg
.(((((((((.(((...((((((((...........).)))))))...))))))))))))...

Structure

--A         U   AAC       - uuuc 
   AAUCUCAGC GGC   UGUGAgu c    a
   ||||||||| |||   ||||||| |    c
   UUAGGGUCG CCG   ACACUca g    u
gUA         -   GUA       c ucua

Annotation confidence Not enough data

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Genome context

HE567337.1: 56-118 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from gmo-mir-216a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature gmo-miR-216a-5p

Accession	MIMAT0044329
Description	Gadus morhua gmo-miR-216a-5p mature miRNA
Sequence	1 - AAAUCUCAGCUGGCAACUGUGA - 22
Evidence	experimental SOLiD [1]

Mature gmo-miR-216a-3p

Accession	MIMAT0044330
Description	Gadus morhua gmo-miR-216a-3p mature miRNA
Sequence	41 - UCACAAUGGCCGCUGGGAUUAU - 62
Evidence	experimental SOLiD [1]

References

PubMed ID: 25881242
Temperature during early development has long-term effects on microRNA expression in Atlantic cod
Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
BMC Genomics (2015) 16:305