Stem-loop gmo-mir-8160b

Accession

MI0036294

Description

Gadus morhua gmo-mir-8160b precursor miRNA

Sequence

AGAAUAAUGCCAGCAGUCGGCcgugcugcgagcgccucuggCCAGCGCUGGUGUUAUUGGGA
..((((((((((((.((.(((((((((...)))))....)))).))))))))))))))....

Structure

--AG            A  C    ----     g 
    AAUAAUGCCAGC GU GGCc    gugcu  
    |||||||||||| || ||||    ||||| c
    UUAUUGUGGUCG CG CCgg    cgcga  
AGGG            -  A    ucuc     g 

Annotation confidence Not enough data

Genome context

HE571216.1: 151993-152054 [+]

Mature gmo-miR-8160b-5p

• Accession: MIMAT0044411
• Description: Gadus morhua gmo-miR-8160b-5p mature miRNA
• Sequence: 1 - AGAAUAAUGCCAGCAGUCGGC - 21
• Evidence: experimental ; SOLiD [1], Illumina [2]

Mature gmo-miR-8160b-3p

• Accession: MIMAT0044412
• Description: Gadus morhua gmo-miR-8160b-3p mature miRNA
• Sequence: 42 - CCAGCGCUGGUGUUAUUGGGA - 62
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 25881242
   Temperature during early development has long-term effects on microRNA expression in Atlantic cod
   Bizuayehu TT, Johansen SD, Puvanendran V, Toften H, Babiak I
   BMC Genomics (2015) 16:305


2. PubMed ID: 27128807
   Discovery of miRNAs and Their Corresponding miRNA Genes in Atlantic Cod (Gadus morhua): Use of Stable miRNAs as Reference Genes Reveals Subgroups of miRNAs That Are Highly Expressed in Particular Organs
   Andreassen R, Rangnes F, Sivertsen M, Chiang M, Tran M, Worren MM
   PLoS One (2016) 11:e0153324