Stem-loop pab-MIR11500

Accession

MI0036960

Description

Picea abies pab-MIR11500 precursor miRNA

Sequence

agaacaugggcaaggaucauugaugaagccucgcaggucugcaggagggcauggaauuucauacccacauauuaacauaaacuuaaaugagaacuggacuccuuccaagagugauggacuggacuggaggguuggugggagagcagaacaaagccaaaugaaugaaugauguggagcaugaaucucUAUGCCUGCUUGUAGAUCUGUUagguuuuuuaugccuugcuucuucu
((((...((((((((..(((....(((((((.(((((((((((((.(((((((((..(((((.(((((((.....(((...............(((..(((((.((((......(((......))).....)))).)))))..)))...............)))....)))))).).)))))..))))))))).))))))))))))).)))))))..))))))))))).))))

Structure

    cau        au   ugau       c             a         au     a -      auuaa   aaacuuaaaugagaa   ga     u    gaguga   ac 
agaa   gggcaagg  cau    gaagccu gcaggucugcagg gggcaugga  uucau c ccacau     cau               cug  cuccu ccaa      ugg  u
||||   ||||||||  |||    ||||||| ||||||||||||| |||||||||  ||||| | ||||||     |||               |||  ||||| ||||      |||   
ucuu   uucguucc  gua    uuuugga UGUCUAGAUGUUC UCCGUAUcu  aagua g ggugua     gua               gac  gaggg gguu      guc  g
    --c        --   --uu       U             G         cu     c a      -guaa   aguaaaccgaaacaa   ga     u    -gggag   ag 

Annotation confidence Not enough data

Genome context

MA_8333: 31687-31919 [-]

Mature pab-miR11500

• Accession: MIMAT0045058
• Description: Picea abies pab-miR11500 mature miRNA
• Sequence: 187 - UAUGCCUGCUUGUAGAUCUGUU - 208
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26318183
   Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
   "Xia R, Xu J, Arikit S, Meyers BC"
   "Mol Biol Evol (2015) 32:2905-2918