miRBase entry: tca-mir-11618a-1

Stem-loop tca-mir-11618a-1

Accession

MI0037360

Description

Tribolium castaneum tca-mir-11618a-1 precursor miRNA

Sequence

acaaaauguuuucgauguauAGUUAGCAUUGGUCGUUUCUAUGcuuuuuugugaucaUAUACCGAUCGAUGCUCGCUUUauuucgagucacau
.....((((.(((((.(((.(((.(((((((((((....((((.((......)).))))...))))))))))).))).))).)))))..))))

Structure

acaaa    -u     u   u   U           UUUC    c  uu 
     augu  uucga gua AGU AGCAUUGGUCG    UAUG uu  u
     ||||  ||||| ||| ||| |||||||||||    |||| ||   
     uaca  gagcu uaU UCG UCGUAGCUAGC    AUac ag  u
-----    cu     u   U   C           -CAU    u  ug

Annotation confidence Not enough data

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Genome context

ChLG2: 2688893-2688985 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-11618a-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11618a-5p

Accession	MIMAT0045489
Description	Tribolium castaneum tca-miR-11618a-5p mature miRNA
Sequence	21 - AGUUAGCAUUGGUCGUUUCUAUG - 43
Evidence	experimental Illumina [1]

Mature tca-miR-11618a-3p

Accession	MIMAT0045490
Description	Tribolium castaneum tca-miR-11618a-3p mature miRNA
Sequence	58 - UAUACCGAUCGAUGCUCGCUUU - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96