miRBase entry: tca-mir-3851k-1

Stem-loop tca-mir-3851k-1

Accession

MI0037362

Description

Tribolium castaneum tca-mir-3851k-1 precursor miRNA

Sequence

gcauaaauuuagugcugGGUUGGCAAAAGGUGGUACCAUGuaacauuuuaacccaUAGUACGACCCAUGCCGGCUCAguaauaaauuacaau
.....((((((.(((((((((((((...(((.((((.(((.............))).)))).)))..))))))))))))).)))))).....

Structure

gcaua      g             AAA   G    C   uaaca 
     aauuua ugcugGGUUGGCA   GGU GUAC AUG     u
     |||||| |||||||||||||   ||| |||| |||     u
     uuaaau augACUCGGCCGU   CCA CAUG Uac     u
uaaca      a             -AC   G    A   ccaau

Annotation confidence Not enough data

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Genome context

ChLG2: 2687120-2687211 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-3851k-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851k-5p

Accession	MIMAT0045493
Description	Tribolium castaneum tca-miR-3851k-5p mature miRNA
Sequence	18 - GGUUGGCAAAAGGUGGUACCAUG - 40
Evidence	experimental Illumina [1]

Mature tca-miR-3851k-3p

Accession	MIMAT0045494
Description	Tribolium castaneum tca-miR-3851k-3p mature miRNA
Sequence	56 - UAGUACGACCCAUGCCGGCUCA - 77
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96