miRBase entry: tca-mir-11618a-4

Stem-loop tca-mir-11618a-4

Accession

MI0037367

Description

Tribolium castaneum tca-mir-11618a-4 precursor miRNA

Sequence

uguuuucgauguauAGUUAGCAUUGGUCGUCUCUAUGcuuuuuuaugaucaUAUACCGAUCGAUGCUCGCUUUauuucgaaucac
....(((((.(((.(((.(((((((((((....((((.((......)).))))...))))))))))).))).))).)))))....

Structure

uguu     u   u   U           UCUC    c  uu 
    uucga gua AGU AGCAUUGGUCG    UAUG uu  u
    ||||| ||| ||| |||||||||||    |||| ||   
    aagcu uaU UCG UCGUAGCUAGC    AUac ag  u
cacu     u   U   C           -CAU    u  ua

Annotation confidence Not enough data

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Genome context

ChLG2: 2684982-2685066 [+]

Clustered miRNAs

21 other miRNAs are < 10 kb from tca-mir-11618a-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-11618a-3p

Accession	MIMAT0045490
Description	Tribolium castaneum tca-miR-11618a-3p mature miRNA
Sequence	52 - UAUACCGAUCGAUGCUCGCUUU - 73
Evidence	experimental Illumina [1]

Mature tca-miR-11618a-4-5p

Accession	MIMAT0045503
Description	Tribolium castaneum tca-miR-11618a-4-5p mature miRNA
Sequence	15 - AGUUAGCAUUGGUCGUCUCUAUG - 37
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96