miRBase entry: tca-mir-3851n-2

Stem-loop tca-mir-3851n-2

Accession

MI0037399

Description

Tribolium castaneum tca-mir-3851n-2 precursor miRNA

Sequence

auuuuugaguaaauuuaguacugGGUUGGCACAGAGUAGUACUGUGuaaaauucuauuucaUAGUACGACCCAUGCCGGCCUAguaagagauuucauuucaccagc
.....((((.((((((..(((((((((((((..(.((.((((((((.(((......))))))))))).)))..)))))))))))))..))))))...)))).....

Structure

auuuu    --u      ag             CA A  A        u   au 
     ugag   aaauuu  uacugGGUUGGCA  G GU GUACUGUG aaa  u
     ||||   ||||||  |||||||||||||  | || |||||||| |||   
     acuu   uuuaga  augAUCCGGCCGU  C CA CAUGAUac uuu  c
cgacc    uac      ga             AC -  G        -   au

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Unmapped79: 10385-10490 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from tca-mir-3851n-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851n-5p

Accession	MIMAT0045482
Description	Tribolium castaneum tca-miR-3851n-5p mature miRNA
Sequence	24 - GGUUGGCACAGAGUAGUACUGUG - 46
Evidence	experimental Illumina [1]

Mature tca-miR-3851n-3p

Accession	MIMAT0045483
Description	Tribolium castaneum tca-miR-3851n-3p mature miRNA
Sequence	62 - UAGUACGACCCAUGCCGGCCUA - 83
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96