miRBase entry: tca-mir-3851m-4

Stem-loop tca-mir-3851m-4

Accession

MI0037426

Description

Tribolium castaneum tca-mir-3851m-4 precursor miRNA

Sequence

uuaguacugGGUUGGCACAGAGUAGUACUAUGuaaaauucuauuucaUAGUACGACCCGUGUCGGCCCAguaagag
....((((((((((((((.(.((.((((((((.(((......))))))))))).))).))))))))))))))....

Structure

uuag              A A  A        u   au 
    uacugGGUUGGCAC G GU GUACUAUG aaa  u
    |||||||||||||| | || |||||||| |||   
    augACCCGGCUGUG C CA CAUGAUac uuu  c
gaga              C -  G        -   au

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

Unmapped66: 13133-13208 [-]

Clustered miRNAs

4 other miRNAs are < 10 kb from tca-mir-3851m-4

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature tca-miR-3851m-5p

Accession	MIMAT0045466
Description	Tribolium castaneum tca-miR-3851m-5p mature miRNA
Sequence	10 - GGUUGGCACAGAGUAGUACUAUG - 32
Evidence	experimental Illumina [1]

Mature tca-miR-3851m-4-3p

Accession	MIMAT0045585
Description	Tribolium castaneum tca-miR-3851m-4-3p mature miRNA
Sequence	48 - UAGUACGACCCGUGUCGGCCCA - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 26518483
MicroRNA evolution, expression, and function during short germband development in Tribolium castaneum
"Ninova M, Ronshaugen M, Griffiths-Jones S"
"Genome Res (2016) 26:85-96