miRBase entry: xla-mir-100-1

Stem-loop xla-mir-100-1

Accession

MI0038227

Description

Xenopus laevis xla-mir-100-1 precursor miRNA

Literature search

2 open access papers mention xla-mir-100-1
(6 sentences)

Sequence

AACCCGUAGAUCCGAACUUGUGcugugccccucucacaagcuCGAGUGUGCGGGUCUGUGUCGGCUUGG
...(((((((((((.(((((.((((((.......))).))).)))))...))))))))...))).....

Structure

--AAC   ---        --A     U   -   cc 
     CCG   UAGAUCCG   ACUUG Gcu gug  c
     |||   ||||||||   ||||| ||| |||  c
     GGC   GUCUGGGC   UGAGC cga cac  u
GGUUC   UGU        GUG     u   a   uc

Annotation confidence Not enough data

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Genome context

chr7L: 113015055-113015123 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-100-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-100-5p

Accession	MIMAT0046409
Description	Xenopus laevis xla-miR-100-5p mature miRNA
Sequence	1 - AACCCGUAGAUCCGAACUUGUG - 22
Evidence	experimental Illumina [1]

Mature xla-miR-100-3p

Accession	MIMAT0046411
Description	Xenopus laevis xla-miR-100-3p mature miRNA
Sequence	43 - CGAGUGUGCGGGUCUGUGUCGGCUUGG - 69
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38