Stem-loop xla-mir-130c-1

Accession

MI0038246

Description

Xenopus laevis xla-mir-130c-1 precursor miRNA

Sequence

GCCCUUUUUCUGUUGUACUACUggaauuuguaauuagCAGUGCAAUAUUAAAAGGGCAU
((((((((..(((((((((.(((...........))).)))))))))..))))))))..

Structure

--        UC         A   gaau 
  GCCCUUUU  UGUUGUACU CUg    u
  ||||||||  ||||||||| |||    u
  CGGGAAAA  AUAACGUGA gau    g
UA        UU         C   uaau 

Annotation confidence Not enough data

Genome context

chr1S: 133547822-133547880 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-130c-1

Mature xla-miR-130c-5p

• Accession: MIMAT0046445
• Description: Xenopus laevis xla-miR-130c-5p mature miRNA
• Sequence: 1 - GCCCUUUUUCUGUUGUACUACU - 22
• Evidence: experimental ; Illumina [1]

Mature xla-miR-130c-3p

• Accession: MIMAT0046446
• Description: Xenopus laevis xla-miR-130c-3p mature miRNA
• Sequence: 38 - CAGUGCAAUAUUAAAAGGGCAU - 59
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26548531
   Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
   "Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
   "Dev Biol (2016) 409:26-38