miRBase entry: xla-mir-16c

Stem-loop xla-mir-16c

Accession

MI0038266

Description

Xenopus laevis xla-mir-16c precursor miRNA

Literature search

2 open access papers mention xla-mir-16c
(9 sentences)

Sequence

UAGCAGCACGUAAAUACUGGAGuucaucaccauaucugcacucuCCAGUAUUACUUUGCUGCUAUA
((((((((.((((.((((((((....................))))))))))))..))))))))..

Structure

--        -C    A        uucaucacc 
  UAGCAGCA  GUAA UACUGGAG         a
  ||||||||  |||| ||||||||          
  AUCGUCGU  CAUU AUGACCuc         u
AU        UU    -        ucacgucua

Annotation confidence Not enough data

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Genome context

chr8S: 74386415-74386480 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-16c

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-16c-5p

Accession	MIMAT0046480
Description	Xenopus laevis xla-miR-16c-5p mature miRNA
Sequence	1 - UAGCAGCACGUAAAUACUGGAG - 22
Evidence	experimental Illumina [1]

Mature xla-miR-16c-3p

Accession	MIMAT0046481
Description	Xenopus laevis xla-miR-16c-3p mature miRNA
Sequence	45 - CCAGUAUUACUUUGCUGCUAUA - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38