miRBase entry: xla-mir-98

Stem-loop xla-mir-98

Accession

MI0038343

Description

Xenopus laevis xla-mir-98 precursor miRNA

Sequence

UGAGGUAGUAAGUUGUAUUGUUguggggguguuucauuuccccaaauuaggagauaaCUAUACAGUUUACUGCCUUCCC
.(((((((((((((((((.((((((((((.........))))))..........)))).)))))))))))))))))...

Structure

--U                 U    ----------      ugu 
   GAGGUAGUAAGUUGUAU GUUg          uggggg   u
   ||||||||||||||||| ||||          ||||||   u
   UUCCGUCAUUUGACAUA Caau          accccu   c
CCC                 U    agaggauuaa      uua

Annotation confidence Not enough data

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Genome context

chr8S: 36774667-36774745 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from xla-mir-98

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature xla-miR-98-5p

Accession	MIMAT0046617
Description	Xenopus laevis xla-miR-98-5p mature miRNA
Sequence	1 - UGAGGUAGUAAGUUGUAUUGUU - 22
Evidence	experimental Illumina [1]

Mature xla-miR-98-3p

Accession	MIMAT0046618
Description	Xenopus laevis xla-miR-98-3p mature miRNA
Sequence	58 - CUAUACAGUUUACUGCCUUCCC - 79
Evidence	experimental Illumina [1]

References

PubMed ID: 26548531
Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1
"Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK"
"Dev Biol (2016) 409:26-38