miRBase entry: cpo-mir-29b-2

Stem-loop cpo-mir-29b-2

Accession

MI0038588

Description

Cavia porcellus cpo-mir-29b-2 precursor miRNA

Sequence

CUGGUUUCACAUGGUGGCUUAGAuuuuucgaucuuuguaucUAGCACCAUUUGAAAUCAGUGUU
(((((((((.((((((.((.((((..............)))))))))))).)))))))))....

Structure

----         C      G  U    uuuucg 
    CUGGUUUCA AUGGUG CU AGAu      a
    ||||||||| |||||| || ||||       
    GACUAAAGU UACCAC GA Ucua      u
UUGU         U      -  -    uguuuc

Annotation confidence Not enough data

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Genome context

DS562867.1: 15329414-15329477 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-29b-2

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-29b-3p

Accession	MIMAT0046899
Description	Cavia porcellus cpo-miR-29b-3p mature miRNA
Sequence	42 - UAGCACCAUUUGAAAUCAGUGUU - 64
Evidence	experimental Illumina [1]

Mature cpo-miR-29b-2-5p

Accession	MIMAT0046900
Description	Cavia porcellus cpo-miR-29b-2-5p mature miRNA
Sequence	1 - CUGGUUUCACAUGGUGGCUUAGA - 23
Evidence	not_experimental

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344