miRBase entry: cpo-mir-200a

Stem-loop cpo-mir-200a

Accession

MI0038692

Description

Cavia porcellus cpo-mir-200a precursor miRNA

Sequence

CAUCUUACCGGACAGUGCUGGAuuucuuggcuugacucUAACACUGUCUGGUAACGAUGUU
(((((((((((((((((.((((..((.......)).)))).))))))))))))).))))..

Structure

--    -             C    uu  uu 
  CAUC UUACCGGACAGUG UGGA  uc  g
  |||| ||||||||||||| ||||  ||  g
  GUAG AAUGGUCUGUCAC AUcu  ag  c
UU    C             A    -c  uu

Annotation confidence Not enough data

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Genome context

DS563041.1: 1149699-1149759 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from cpo-mir-200a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-200a-5p

Accession	MIMAT0047089
Description	Cavia porcellus cpo-miR-200a-5p mature miRNA
Sequence	1 - CAUCUUACCGGACAGUGCUGGA - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-200a-3p

Accession	MIMAT0047090
Description	Cavia porcellus cpo-miR-200a-3p mature miRNA
Sequence	39 - UAACACUGUCUGGUAACGAUGUU - 61
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344