miRBase entry: cpo-mir-433

Stem-loop cpo-mir-433

Accession

MI0038775

Description

Cavia porcellus cpo-mir-433 precursor miRNA

Sequence

UACGGUGAGCCUGUCAUUAUUCagagaggcuagauccucuguguugagaaggAUCAUGAUGGGCUCCUCGGUGU
..(((.(((((((((((.(((((.(((((......))))).))........))).))))))))))).)))....

Structure

--UA   U           U   --------  g     cu 
    CGG GAGCCUGUCAU AUU        Ca agagg  a
    ||| ||||||||||| |||        || |||||   
    GCU CUCGGGUAGUA UAg        gu ucucc  g
UGUG   C           C   gaagaguu  g     ua

Annotation confidence Not enough data

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Genome context

DS562966.1: 952524-952597 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from cpo-mir-433

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-433-5p

Accession	MIMAT0047253
Description	Cavia porcellus cpo-miR-433-5p mature miRNA
Sequence	1 - UACGGUGAGCCUGUCAUUAUUC - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-433-3p

Accession	MIMAT0047254
Description	Cavia porcellus cpo-miR-433-3p mature miRNA
Sequence	53 - AUCAUGAUGGGCUCCUCGGUGU - 74
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344