miRBase entry: cpo-mir-487a

Stem-loop cpo-mir-487a

Accession

MI0038789

Description

Cavia porcellus cpo-mir-487a precursor miRNA

Sequence

GUGGUUAUCCCUGCUGUGUUCGcuuuauuuaugacgAAUCAUACAGGGACAUCCAGUU
.(((...((((((.(((((((((.........).)))).))))))))))...)))...

Structure

--G   UUA      C    -    - uuu 
   UGG   UCCCUG UGUG UUCG c   a
   |||   |||||| |||| |||| |   u
   ACC   AGGGAC AUAC AAgc g   u
UUG   UAC      -    U    a uau

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

DS562966.1: 1104622-1104679 [+]

Clustered miRNAs

18 other miRNAs are < 10 kb from cpo-mir-487a

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-487a-5p

Accession	MIMAT0047279
Description	Cavia porcellus cpo-miR-487a-5p mature miRNA
Sequence	1 - GUGGUUAUCCCUGCUGUGUUCG - 22
Evidence	experimental Illumina [1]

Mature cpo-miR-487a-3p

Accession	MIMAT0047280
Description	Cavia porcellus cpo-miR-487a-3p mature miRNA
Sequence	37 - AAUCAUACAGGGACAUCCAGUU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344