miRBase entry: cpo-mir-500b

Stem-loop cpo-mir-500b

Accession

MI0038800

Description

Cavia porcellus cpo-mir-500b precursor miRNA

Sequence

UAAUCCUUGCUACCUGGGUGAGAGUgcuuugugaaugcAGUGCACCUGGGCAAGGGUUCUGU
.(((((((((...(((((((..(.(((.........))).).))))))))))))))))....

Structure

---U         UAC       AG G   uuu 
    AAUCCUUGC   CUGGGUG  A Ugc   g
    |||||||||   |||||||  | |||   u
    UUGGGAACG   GGUCCAC  U Acg   g
UGUC         ---       -G G   uaa

Annotation confidence Not enough data

Do you think this miRNA is real?

Genome context

DS562987.1: 3010278-3010339 [+]

Clustered miRNAs

7 other miRNAs are < 10 kb from cpo-mir-500b

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-500b-5p

Accession	MIMAT0047301
Description	Cavia porcellus cpo-miR-500b-5p mature miRNA
Sequence	1 - UAAUCCUUGCUACCUGGGUGAGAGU - 25
Evidence	experimental Illumina [1]

Mature cpo-miR-500b-3p

Accession	MIMAT0047302
Description	Cavia porcellus cpo-miR-500b-3p mature miRNA
Sequence	39 - AGUGCACCUGGGCAAGGGUUCUGU - 62
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344