miRBase entry: cpo-mir-541

Stem-loop cpo-mir-541

Accession

MI0038819

Description

Cavia porcellus cpo-mir-541 precursor miRNA

Sequence

AGAGGAUUCUGCUGCCGGUCCCACUccaaaguuuauaaaaugggUGGUGGGCACAGAAUCCGGACU
...((((((((.((((.(..((((.(((............)))))))).)))))))))))).....

Structure

--AGA        C    G UC    U   aaguu 
     GGAUUCUG UGCC G  CCAC cca     u
     |||||||| |||| |  |||| |||      
     CCUAAGAC ACGG U  GGUg ggu     a
UCAGG        -    G --    -   aaaau

Annotation confidence Not enough data

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Genome context

DS562966.1: 1116256-1116321 [+]

Clustered miRNAs

12 other miRNAs are < 10 kb from cpo-mir-541

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-541-5p

Accession	MIMAT0047339
Description	Cavia porcellus cpo-miR-541-5p mature miRNA
Sequence	1 - AGAGGAUUCUGCUGCCGGUCCCACU - 25
Evidence	experimental Illumina [1]

Mature cpo-miR-541-3p

Accession	MIMAT0047340
Description	Cavia porcellus cpo-miR-541-3p mature miRNA
Sequence	45 - UGGUGGGCACAGAAUCCGGACU - 66
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344