miRBase entry: cpo-mir-1197

Stem-loop cpo-mir-1197

Accession

MI0038851

Description

Cavia porcellus cpo-mir-1197 precursor miRNA

Sequence

CGGUUGACCAUGGUGUGUACGcuuuaugugugacgUAGGACACAUGGUCUACUUCU
.(((.(((((((.(((.(((((.........).))))..)))))))))).)))...

Structure

--C   U       G   -G    - uuu 
   GGU GACCAUG UGU  UACG c   a
   ||| ||||||| |||  |||| |   u
   UCA CUGGUAC ACA  AUgc g   g
UCU   U       -   GG    a ugu

Annotation confidence Not enough data

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Genome context

DS562966.1: 1085473-1085528 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from cpo-mir-1197

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-1197-5p

Accession	MIMAT0047403
Description	Cavia porcellus cpo-miR-1197-5p mature miRNA
Sequence	1 - CGGUUGACCAUGGUGUGUACG - 21
Evidence	experimental Illumina [1]

Mature cpo-miR-1197-3p

Accession	MIMAT0047404
Description	Cavia porcellus cpo-miR-1197-3p mature miRNA
Sequence	36 - UAGGACACAUGGUCUACUUCU - 56
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344