miRBase entry: cpo-mir-12082

Stem-loop cpo-mir-12082

Accession

MI0038883

Description

Cavia porcellus cpo-mir-12082 precursor miRNA

Sequence

AAGCCAACCACAGACACCACAGAaaagauaaaucucucUGAUGGUGUCUUAGUUGCUUUC
((((.(((...((((((((((((..(((....))).)))).))))))))..)))))))..

Structure

--    C   CAC        -    aa   u 
  AAGC AAC   AGACACCA CAGA  aga a
  |||| |||   |||||||| ||||  |||  
  UUCG UUG   UCUGUGGU GUcu  ucu a
CU    -   -AU        A    -c   a

Annotation confidence Not enough data

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Genome context

DS562862.1: 45795923-45795982 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from cpo-mir-12082

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature cpo-miR-12082-5p

Accession	MIMAT0047467
Description	Cavia porcellus cpo-miR-12082-5p mature miRNA
Sequence	1 - AAGCCAACCACAGACACCACAGA - 23
Evidence	experimental Illumina [1]

Mature cpo-miR-12082-3p

Accession	MIMAT0047468
Description	Cavia porcellus cpo-miR-12082-3p mature miRNA
Sequence	39 - UGAUGGUGUCUUAGUUGCUUUC - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344