miRBase entry: ocu-mir-25

Stem-loop ocu-mir-25

Accession

MI0039238

Description

Oryctolagus cuniculus ocu-mir-25 precursor miRNA

Literature search

1 open access papers mention ocu-mir-25
(1 sentences)

Sequence

AGGCGGAGACUUGGGCAAUUGCUggacgcugcccugggCAUUGCACUUGUCUCGGUCUGA
((((.(((((..(.(((((..((((........))))..))))).)..))))).))))..

Structure

--    G     UU G     UG    acg 
  AGGC GAGAC  G GCAAU  CUgg   c
  |||| |||||  | |||||  ||||    
  UCUG CUCUG  C CGUUA  gguc   u
AG    G     UU A     Cg    ccg

Annotation confidence Not enough data

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Genome context

GL018760.1: 103178-103237 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ocu-mir-25

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-25-5p

Accession	MIMAT0048133
Description	Oryctolagus cuniculus ocu-miR-25-5p mature miRNA
Sequence	1 - AGGCGGAGACUUGGGCAAUUGCU - 23
Evidence	experimental Illumina [1]

Mature ocu-miR-25-3p

Accession	MIMAT0048134
Description	Oryctolagus cuniculus ocu-miR-25-3p mature miRNA
Sequence	39 - CAUUGCACUUGUCUCGGUCUGA - 60
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344