miRBase entry: ocu-mir-29b-1

Stem-loop ocu-mir-29b-1

Accession

MI0039244

Description

Oryctolagus cuniculus ocu-mir-29b-1 precursor miRNA

Literature search

3 open access papers mention ocu-mir-29b-1
(3 sentences)

Sequence

GCUGGUUUCAUAUGGUGGUUUAGAuuuaaauagugauugucUAGCACCAUUUGAAAUCAGUGUU
((((((((((.((((((..((((((.............)))))))))))).))))))))))...

Structure

---          U      GU      uuaaa 
   GCUGGUUUCA AUGGUG  UUAGAu     u
   |||||||||| ||||||  ||||||     a
   UGACUAAAGU UACCAC  GAUcug     g
UUG          U      --      uuagu

Annotation confidence Not enough data

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Genome context

CM000796.1: 9515809-9515872 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-29b-1

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-29b-5p

Accession	MIMAT0048145
Description	Oryctolagus cuniculus ocu-miR-29b-5p mature miRNA
Sequence	1 - GCUGGUUUCAUAUGGUGGUUUAGA - 24
Evidence	experimental Illumina [1]

Mature ocu-miR-29b-3p

Accession	MIMAT0048146
Description	Oryctolagus cuniculus ocu-miR-29b-3p mature miRNA
Sequence	42 - UAGCACCAUUUGAAAUCAGUGUU - 64
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344