miRBase entry: ocu-mir-154

Stem-loop ocu-mir-154

Accession

MI0039313

Description

Oryctolagus cuniculus ocu-mir-154 precursor miRNA

Sequence

UAGGUUAUCCGUGUUGCCUUCGcuguacucgugacgAAUCAUACACGGUUGGCCUAUU
(((((((.((((((....(((((.........).))))....)))))).)))))))..

Structure

--       U      UGCC    - ugu 
  UAGGUUA CCGUGU    UUCG c   a
  ||||||| ||||||    |||| |   c
  AUCCGGU GGCACA    AAgc g   u
UU       U      UACU    a ugc

Annotation confidence Not enough data

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Genome context

GL019048.1: 147896-147953 [+]

Clustered miRNAs

13 other miRNAs are < 10 kb from ocu-mir-154

Name	Accession	Chromosome	Start	End	Strand	Confidence

Database links

Mature ocu-miR-154-5p

Accession	MIMAT0048271
Description	Oryctolagus cuniculus ocu-miR-154-5p mature miRNA
Sequence	1 - UAGGUUAUCCGUGUUGCCUUCG - 22
Evidence	experimental Illumina [1]

Mature ocu-miR-154-3p

Accession	MIMAT0048272
Description	Oryctolagus cuniculus ocu-miR-154-3p mature miRNA
Sequence	37 - AAUCAUACACGGUUGGCCUAUU - 58
Evidence	experimental Illumina [1]

References

PubMed ID: 26733575
The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
"Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
"Genome Biol Evol (2016) 8:330-344