Stem-loop ocu-mir-214

Accession

MI0039348

Description

Oryctolagus cuniculus ocu-mir-214 precursor miRNA

Literature search

2 open access papers mention ocu-mir-214
(4 sentences)

Sequence

UGCCUGUCUACACUUGCUGUGCagaacauccgcucaccuguACAGCAGGCACAGACAGGCAGU
(((((((((...((((((((((((.............))))))))))))...)))))))))..

Structure

--         ACA            aacau 
  UGCCUGUCU   CUUGCUGUGCag     c
  |||||||||   ||||||||||||     c
  ACGGACAGA   GGACGACAuguc     g
UG         CAC            cacuc 

Annotation confidence Not enough data

Genome context

CM000802.1: 20634041-20634103 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ocu-mir-214

Mature ocu-miR-214-5p

• Accession: MIMAT0048337
• Description: Oryctolagus cuniculus ocu-miR-214-5p mature miRNA
• Sequence: 1 - UGCCUGUCUACACUUGCUGUGC - 22
• Evidence: experimental ; Illumina [1]

Mature ocu-miR-214-3p

• Accession: MIMAT0048338
• Description: Oryctolagus cuniculus ocu-miR-214-3p mature miRNA
• Sequence: 42 - ACAGCAGGCACAGACAGGCAGU - 63
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 26733575
   The Interrelationships of Placental Mammals and the Limits of Phylogenetic Inference
   "Tarver JE, Dos Reis M, Mirarab S, Moran RJ, Parker S, O'Reilly JE, King BL, O'Connell MJ, Asher RJ, Warnow T, Peterson KJ, Donoghue PC, Pisani D"
   "Genome Biol Evol (2016) 8:330-344