Stem-loop smc-mir-12458

Accession

MI0041067

Description

Symbiodinium microadriaticum smc-mir-12458 precursor miRNA

Sequence

CAGUCGGCCAAAGUGCUGGACCacgcuggacaagguuguauuggagaccaccuuguccagcgcguggUCCAGCACUUUGGCUGUCUGCC
(((.((((((((((((((((((((((((((((((((.((.......)).))))))))))))..)))))))))))))))))))).)))..

Structure

--   U                    --            u  au 
  CAG CGGCCAAAGUGCUGGACCac  gcuggacaaggu gu  u
  ||| ||||||||||||||||||||  |||||||||||| ||  g
  GUC GUCGGUUUCACGACCUggug  cgaccuguucca ca  g
CC   U                    cg            c  ga 

Annotation confidence Not enough data

Genome context

LSRX01000014.1: 1008822-1008910 [+]

Mature smc-miR-12458-5p

• Accession: MIMAT0050481
• Description: Symbiodinium microadriaticum smc-miR-12458-5p mature miRNA
• Sequence: 1 - CAGUCGGCCAAAGUGCUGGACC - 22
• Evidence: experimental ; Illumina [1]

Mature smc-miR-12458-3p

• Accession: MIMAT0050482
• Description: Symbiodinium microadriaticum smc-miR-12458-3p mature miRNA
• Sequence: 68 - UCCAGCACUUUGGCUGUCUGCC - 89
• Evidence: experimental ; Illumina [1]

References

1. PubMed ID: 24119094
   Integrating microRNA and mRNA expression profiling in Symbiodinium microadriaticum, a dinoflagellate symbiont of reef-building corals
   "Baumgarten S, Bayer T, Aranda M, Liew YJ, Carr A, Micklem G, Voolstra CR"
   "BMC Genomics (2013) 14:704