MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs |
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PubMed ID | 22156213 |
Authors | "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC" |
Journal | "Genes Dev |
Volume | 25 |
Pages | 2540-2553 |
Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
---|---|---|---|---|---|---|---|
gma-MIR160a | MI0001774 | None | chr10 | 44431708 | 44431826 | - | - |
gma-MIR396b | MI0001786 | None | chr13 | 27517027 | 27517152 | + | - |
gma-MIR156b | MI0001790 | None | chr14 | 992155 | 992274 | + | - |
mtr-MIR169d | MI0005578 | None | chr2 | 13468364 | 13468603 | + | - |
mtr-MIR169e | MI0005579 | None | chr2 | 13473516 | 13473616 | + | - |
mtr-MIR166c | MI0005581 | None | chr3 | 33641974 | 33642078 | - | - |
mtr-MIR398a | MI0005599 | None | chr5 | 18765673 | 18765770 | - | - |
mtr-MIR393b | MI0005601 | None | chr5 | 33945918 | 33946036 | + | - |
mtr-MIR169g | MI0005604 | None | chr6 | 3029966 | 3030176 | + | - |
mtr-MIR166f | MI0005614 | None | chr7 | 26018024 | 26018202 | - | - |
mtr-MIR171e | MI0005620 | None | chr4 | 39704652 | 39704744 | + | - |
mtr-MIR396a | MI0005621 | None | chr4 | 39789612 | 39789704 | + | - |
mtr-MIR169h | MI0005623 | None | chr4 | 44360866 | 44360951 | - | - |
mtr-MIR169b | MI0005625 | None | None | None | - | ||
gma-MIR162a | MI0007208 | None | chr6 | 20376062 | 20376163 | - | - |
gma-MIR482a | MI0007218 | None | chr2 | 7873063 | 7873157 | + | - |
gma-MIR1508a | MI0007220 | None | chr16 | 33378856 | 33378950 | + | - |
gma-MIR1510a | MI0007222 | None | chr16 | 31887382 | 31887474 | + | - |
gma-MIR1511 | MI0007223 | None | chr18 | 20910835 | 20910933 | + | - |
mtr-MIR1509a | MI0010543 | None | chr7 | 36253579 | 36253832 | + | - |
gma-MIR1510b | MI0010575 | None | chr2 | 6675723 | 6675816 | + | - |
gma-MIR2109 | MI0010579 | None | chr4 | 36995886 | 36995956 | - | - |
gma-MIR1509b | MI0010730 | None | chr5 | 1350441 | 1350549 | + | - |
mtr-MIR2597 | MI0011834 | None | chr6 | 18776013 | 18776119 | - | - |
mtr-MIR169j | MI0011868 | None | chr2 | 13454079 | 13454208 | + | - |
gma-MIR391 | MI0016521 | None | chr13 | 42292832 | 42292941 | + | - |
gma-MIR156f | MI0016559 | None | chr2 | 47699715 | 47699820 | - | - |
gma-MIR171c | MI0016575 | None | chr7 | 43625963 | 43626066 | - | - |
gma-MIR394b | MI0016577 | None | chr14 | 48784355 | 48784458 | + | - |
gma-MIR4412 | MI0016578 | None | chr4 | 37037465 | 37037552 | - | - |
gma-MIR394a | MI0016582 | None | chr17 | 41517111 | 41517267 | + | - |
gma-MIR4415a | MI0016584 | None | chr18 | 56193529 | 56193704 | + | - |
gma-MIR166c | MI0017829 | None | chr7 | 4502830 | 4502959 | - | - |
gma-MIR166h | MI0017834 | None | chr8 | 14920990 | 14921179 | + | - |
gma-MIR171e | MI0017839 | None | chr5 | 38773113 | 38773202 | - | - |
gma-MIR171g | MI0017841 | None | chr16 | 5376139 | 5376228 | - | - |
gma-MIR398c | MI0017847 | None | chr8 | 14229061 | 14229170 | - | - |
gma-MIR408d | MI0017848 | None | chr19 | 47281670 | 47281799 | - | - |
gma-MIR2118a | MI0017849 | None | chr20 | 36443544 | 36443713 | + | - |
gma-MIR2118b | MI0017850 | None | chr10 | 49169712 | 49169821 | - | - |
gma-MIR530a | MI0017852 | None | chr12 | 33650621 | 33650770 | + | - |
gma-MIR1507c | MI0017854 | None | chr9 | 17134380 | 17134469 | - | - |
gma-MIR1508c | MI0017855 | None | chr9 | 31140427 | 31140516 | + | - |
gma-MIR4996 | MI0017862 | None | chr15 | 5437428 | 5437617 | + | - |
gma-MIR5038a | MI0017913 | None | chr9 | 30857860 | 30858010 | + | - |
gma-MIR169i | MI0017918 | None | chr13 | 21505359 | 21505509 | + | - |
mtr-MIR5206a | MI0018244 | None | chr7 | 23934943 | 23935068 | - | - |
mtr-MIR5210 | MI0018250 | None | chr3 | 22394767 | 22394883 | + | - |
mtr-MIR5213 | MI0018253 | None | chr2 | 18000286 | 18000398 | + | - |
mtr-MIR5214 | MI0018254 | None | chr3 | 1385082 | 1385180 | - | - |
mtr-MIR4414a | MI0018312 | None | chr1 | 31864157 | 31864260 | - | - |
mtr-MIR4414b | MI0018316 | None | None | None | - | ||
mtr-MIR5229b | MI0018319 | None | chr5 | 11293234 | 11293322 | + | - |
mtr-MIR5231 | MI0018321 | None | chr7 | 957949 | 958053 | + | - |
mtr-MIR5239 | MI0018338 | None | AC225474.24 | 38945 | 39055 | - | - |
mtr-MIR5250 | MI0018351 | None | chr5 | 28552485 | 28552600 | - | - |
mtr-MIR2111l | MI0018359 | None | None | None | - | ||
mtr-MIR5262 | MI0018366 | None | chr4 | 37152484 | 37152568 | - | - |
mtr-MIR172b | MI0018368 | None | AC235487.1 | 197953 | 198066 | + | - |
mtr-MIR172c | MI0018369 | None | AC233663.2 | 10169 | 10307 | + | - |
mtr-MIR159b | MI0018370 | None | AC233577.5 | 10385 | 10570 | - | - |
mtr-MIR171h | MI0018372 | None | chr3 | 31404708 | 31404816 | - | - |
mtr-MIR168b | MI0018373 | None | chr5 | 41975236 | 41975333 | + | - |
mtr-MIR156j | MI0018375 | None | chr1 | 3468974 | 3469076 | + | - |
mtr-MIR5264 | MI0018376 | None | chr3 | 17090360 | 17090468 | - | - |
gma-MIR5037c | MI0018625 | None | chr8 | 47698518 | 47698613 | + | - |
gma-MIR5374 | MI0018633 | None | chr5 | 12748029 | 12748248 | - | - |
gma-MIR171j | MI0018641 | None | chr2 | 4065759 | 4065911 | - | - |
gma-MIR397a | MI0018645 | None | chr8 | 4644313 | 4644420 | - | - |
gma-MIR397b | MI0018646 | None | chr13 | 35595158 | 35595279 | - | - |
gma-MIR408a | MI0018647 | None | chr2 | 837414 | 837546 | + | - |
gma-MIR408b | MI0018648 | None | chr3 | 42619826 | 42619957 | - | - |
gma-MIR408c | MI0018649 | None | chr10 | 37083961 | 37084086 | - | - |
gma-MIR3522 | MI0018650 | None | chr15 | 4337688 | 4337774 | + | - |
gma-MIR162c | MI0018659 | None | chr17 | 9894786 | 9894904 | + | - |
gma-MIR166j | MI0018661 | None | chr15 | 3706979 | 3707146 | - | - |
gma-MIR169j | MI0018662 | None | chr2 | 43801693 | 43801777 | - | - |
gma-MIR169l | MI0018664 | None | chr14 | 5435482 | 5435595 | + | - |
gma-MIR171k | MI0018667 | None | chr13 | 27458231 | 27458328 | + | - |
gma-MIR172i | MI0018670 | None | chr15 | 2892841 | 2893001 | - | - |
gma-MIR319h | MI0018673 | None | chr2 | 42629369 | 42629554 | + | - |
gma-MIR319j | MI0018675 | None | chr11 | 1382971 | 1383149 | + | - |
gma-MIR482d | MI0018681 | None | chr10 | 49165318 | 49165412 | - | - |
gma-MIR1512b | MI0018682 | None | chr2 | 8707970 | 8708058 | - | - |
gma-MIR4415b | MI0018685 | None | chr8 | 23061554 | 23061709 | + | - |
mtr-MIR5556 | MI0019081 | None | chr4 | 25278547 | 25278667 | - | - |
mtr-MIR5558 | MI0019085 | None | chr5 | 19731787 | 19731872 | + | - |
mtr-MIR5559 | MI0019086 | None | chr6 | 1058333 | 1058470 | + | - |
mtr-MIR5561 | MI0019089 | None | chr7 | 33922012 | 33922100 | - | - |
mtr-MIR167b | MI0019092 | None | chr7 | 37444819 | 37445025 | + | - |
mtr-MIR168c | MI0019093 | None | chr5 | 10278669 | 10278794 | + | - |
mtr-MIR408 | MI0019094 | None | chr1 | 22930123 | 22930247 | + | - |
gma-MIR5667 | MI0019261 | None | chr7 | 5379134 | 5379221 | - | - |
gma-MIR5671a | MI0019265 | None | chr11 | 27953059 | 27953177 | - | - |
gma-MIR1512c | MI0019270 | None | chr2 | 8698923 | 8699026 | - | - |
gma-MIR530b | MI0019275 | None | chr13 | 41761036 | 41761186 | - | - |
mtr-MIR5740 | MI0019662 | None | chr1 | 4699041 | 4699190 | + | - |
mtr-MIR5741a | MI0019663 | None | chr1 | 21641192 | 21641295 | + | - |
mtr-MIR396c | MI0019664 | None | chr1 | 3016845 | 3016978 | - | - |
mtr-MIR5742 | MI0019665 | None | chr1 | 7023238 | 7023394 | - | - |
mtr-MIR5743a | MI0019666 | None | chr1 | 8428934 | 8429014 | - | - |
mtr-MIR5743b | MI0019667 | None | chr1 | 8438755 | 8438835 | - | - |
mtr-MIR5741b | MI0019668 | None | chr2 | 5612749 | 5612877 | + | - |
mtr-MIR5744 | MI0019669 | None | chr2 | 16613641 | 16613887 | + | - |
mtr-MIR5745a | MI0019670 | None | chr2 | 1577188 | 1577304 | - | - |
mtr-MIR5746 | MI0019671 | None | chr2 | 2646630 | 2646708 | - | - |
mtr-MIR5747 | MI0019672 | None | chr2 | 17005983 | 17006094 | - | - |
mtr-MIR5748 | MI0019673 | None | chr3 | 3472490 | 3472591 | + | - |
mtr-MIR5749 | MI0019674 | None | chr3 | 18828630 | 18828888 | + | - |
mtr-MIR5750 | MI0019675 | None | chr3 | 7917931 | 7918187 | - | - |
mtr-MIR5751 | MI0019676 | None | chr3 | 10919715 | 10919944 | - | - |
mtr-MIR171g | MI0019677 | None | None | None | - | ||
mtr-MIR5752a | MI0019678 | None | chr4 | 818809 | 818927 | - | - |
mtr-MIR5752b | MI0019679 | None | chr4 | 896841 | 896959 | - | - |
mtr-MIR5753 | MI0019680 | None | chr4 | 4555782 | 4555885 | - | - |
mtr-MIR5754 | MI0019681 | None | chr4 | 24463751 | 24463874 | - | - |
mtr-MIR5755 | MI0019682 | None | chr4 | 24877189 | 24877382 | - | - |
mtr-MIR5741c | MI0019684 | None | chr5 | 13211983 | 13212149 | + | - |
mtr-MIR5756 | MI0019685 | None | chr5 | 28805419 | 28805502 | + | - |
mtr-MIR5757 | MI0019686 | None | chr5 | 31242698 | 31242804 | + | - |
mtr-MIR5225b | MI0019687 | None | chr6 | 2359911 | 2360009 | + | - |
mtr-MIR5225c | MI0019688 | None | chr6 | 2545198 | 2545296 | + | - |
mtr-MIR5758 | MI0019689 | None | chr6 | 22625525 | 22625717 | + | - |
mtr-MIR5745b | MI0019690 | None | chr7 | 26377742 | 26377870 | + | - |
mtr-MIR5759 | MI0019691 | None | chr7 | 27924451 | 27924615 | + | - |
mtr-MIR5741d | MI0019692 | None | chr7 | 30592843 | 30593076 | + | - |
mtr-MIR2593e | MI0019693 | None | chr7 | 3414785 | 3414874 | - | - |
mtr-MIR5760 | MI0019694 | None | chr7 | 15223866 | 15223941 | - | - |
mtr-MIR5037a | MI0019695 | None | chr7 | 23948126 | 23948212 | - | - |
mtr-MIR5037b | MI0019696 | None | chr7 | 23954301 | 23954389 | - | - |
mtr-MIR5206b | MI0019697 | None | chr7 | 23959036 | 23959156 | - | - |
mtr-MIR5037c | MI0019698 | None | chr7 | 23961112 | 23961230 | - | - |
mtr-MIR2593d | MI0019699 | None | chr8 | 8822043 | 8822132 | - | - |
mtr-MIR5741e | MI0019700 | None | chr8 | 23422397 | 23422643 | - | - |
mtr-MIR530 | MI0019701 | None | AC235487.1 | 38438 | 38596 | - | - |
gma-MIR5761a | MI0019702 | None | chr10 | 51252115 | 51252310 | - | - |
gma-MIR5762 | MI0019703 | None | chr12 | 653862 | 653999 | + | - |
gma-MIR5763a | MI0019704 | None | chr13 | 36443341 | 36443441 | - | - |
gma-MIR5763b | MI0019705 | None | None | None | - | ||
gma-MIR5764 | MI0019706 | None | chr14 | 33216347 | 33216493 | + | - |
gma-MIR5765 | MI0019707 | None | chr15 | 31455959 | 31456041 | - | - |
gma-MIR5766 | MI0019708 | None | chr16 | 2063448 | 2063687 | - | - |
gma-MIR5767 | MI0019709 | None | chr16 | 30784546 | 30784656 | - | - |
gma-MIR5768 | MI0019710 | None | chr17 | 8459044 | 8459129 | - | - |
gma-MIR5769 | MI0019711 | None | chr18 | 7386834 | 7387003 | + | - |
gma-MIR5770a | MI0019712 | None | chr18 | 46351571 | 46351817 | - | - |
gma-MIR5559 | MI0019713 | None | chr19 | 776239 | 776380 | + | - |
gma-MIR5225 | MI0019714 | None | chr19 | 1966719 | 1966831 | + | - |
gma-MIR393b | MI0019715 | None | chr1 | 42280842 | 42280957 | - | - |
gma-MIR5771 | MI0019716 | None | chr2 | 38012669 | 38012749 | + | - |
gma-MIR4416c | MI0019717 | None | chr2 | 27334573 | 27334768 | - | - |
gma-MIR5761b | MI0019718 | None | chr3 | 3831731 | 3831830 | + | - |
gma-MIR5772 | MI0019719 | None | chr3 | 19529805 | 19529922 | - | - |
gma-MIR5773 | MI0019720 | None | chr3 | 44861560 | 44861732 | + | - |
gma-MIR5774a | MI0019721 | None | chr4 | 11410437 | 11410586 | + | - |
gma-MIR4416b | MI0019722 | None | chr3 | 36067834 | 36067977 | - | - |
gma-MIR1516c | MI0019723 | None | chr4 | 40141067 | 40141189 | + | - |
gma-MIR5775 | MI0019724 | None | chr4 | 9837427 | 9837557 | - | - |
gma-MIR5776 | MI0019726 | None | chr5 | 3506706 | 3506943 | - | - |
gma-MIR5777 | MI0019727 | None | chr5 | 4583480 | 4583724 | - | - |
gma-MIR5778 | MI0019728 | None | chr6 | 47797818 | 47797940 | + | - |
gma-MIR5779 | MI0019729 | None | chr6 | 12762118 | 12762316 | - | - |
gma-MIR5780a | MI0019730 | None | chr6 | 29583605 | 29583732 | - | - |
gma-MIR5781 | MI0019731 | None | chr6 | 36774683 | 36774764 | - | - |
gma-MIR5782 | MI0019732 | None | chr7 | 12611603 | 12611743 | - | - |
gma-MIR5783 | MI0019733 | None | chr7 | 41030514 | 41030597 | + | - |
gma-MIR5770b | MI0019734 | None | chr7 | 16812503 | 16812763 | - | - |
gma-MIR5784 | MI0019735 | None | chr8 | 30764439 | 30764548 | + | - |
gma-MIR5785 | MI0019736 | None | chr8 | 45205542 | 45205683 | - | - |
gma-MIR5763c | MI0019737 | None | None | None | - | ||
gma-MIR5774b | MI0019738 | None | chr9 | 49753426 | 49753582 | - | - |
gma-MIR399a | MI0019739 | None | chr10 | 46844955 | 46845048 | + | - |
gma-MIR828a | MI0019740 | None | chr11 | 9052348 | 9052460 | + | - |
gma-MIR156p | MI0019741 | None | chr11 | 462200 | 462299 | - | - |
gma-MIR530c | MI0019742 | None | chr11 | 26804548 | 26804754 | - | - |
gma-MIR828b | MI0019743 | None | chr12 | 3219162 | 3219271 | + | - |
gma-MIR530d | MI0019744 | None | chr12 | 6225432 | 6225643 | + | - |
gma-MIR171m | MI0019745 | None | chr12 | 8432426 | 8432558 | + | - |
gma-MIR172k | MI0019746 | None | chr12 | 33517484 | 33517617 | + | - |
gma-MIR171n | MI0019747 | None | chr12 | 35463985 | 35464118 | + | - |
gma-MIR156q | MI0019748 | None | chr13 | 22074983 | 22075087 | + | - |
gma-MIR171o | MI0019749 | None | chr13 | 31863180 | 31863281 | + | - |
gma-MIR172l | MI0019750 | None | chr13 | 43075243 | 43075420 | + | - |
gma-MIR169o | MI0019751 | None | chr13 | 21496986 | 21497084 | + | - |
gma-MIR319n | MI0019752 | None | chr13 | 28262485 | 28262580 | - | - |
gma-MIR171p | MI0019753 | None | chr13 | 40504444 | 40504575 | - | - |
gma-MIR530e | MI0019754 | None | chr13 | 41764574 | 41764770 | - | - |
gma-MIR394d | MI0019755 | None | chr15 | 3785393 | 3785475 | + | - |
gma-MIR169p | MI0019756 | None | chr15 | 14192081 | 14192178 | + | - |
gma-MIR156r | MI0019757 | None | chr16 | 6633951 | 6634116 | + | - |
gma-MIR399b | MI0019758 | None | chr16 | 36115809 | 36115909 | + | - |
gma-MIR396j | MI0019759 | None | chr16 | 31530670 | 31530803 | - | - |
gma-MIR171q | MI0019760 | None | chr17 | 1001169 | 1001277 | + | - |
gma-MIR156s | MI0019761 | None | chr17 | 4021217 | 4021350 | - | - |
gma-MIR169r | MI0019762 | None | chr17 | 4587059 | 4587161 | - | - |
gma-MIR169s | MI0019763 | None | chr17 | 4594138 | 4594257 | - | - |
gma-MIR396k | MI0019764 | None | None | None | - | ||
gma-MIR2111b | MI0019765 | None | chr18 | 45662001 | 45662084 | - | - |
gma-MIR2111c | MI0019766 | None | chr18 | 45690335 | 45690493 | - | - |
gma-MIR5786 | MI0019767 | None | chr19 | 1947621 | 1947760 | + | - |
gma-MIR166k | MI0019768 | None | chr19 | 36827774 | 36827945 | - | - |
gma-MIR2111d | MI0019769 | None | None | None | - | ||
gma-MIR156t | MI0019770 | None | chr1 | 56198440 | 56198539 | + | - |
gma-MIR2606a | MI0019771 | None | chr20 | 34012454 | 34012637 | + | - |
gma-MIR482e | MI0019772 | None | None | None | - | ||
gma-MIR399c | MI0019773 | None | chr20 | 39360463 | 39360556 | - | - |
gma-MIR171r | MI0019774 | None | chr4 | 50116148 | 50116249 | + | - |
gma-MIR394e | MI0019775 | None | chr5 | 36014286 | 36014396 | + | - |
gma-MIR399d | MI0019776 | None | chr5 | 35229349 | 35229451 | - | - |
gma-MIR399e | MI0019777 | None | chr5 | 35238378 | 35238516 | - | - |
gma-MIR169t | MI0019778 | None | chr5 | 38544108 | 38544233 | + | - |
gma-MIR171s | MI0019779 | None | chr6 | 10887673 | 10887774 | - | - |
gma-MIR166l | MI0019780 | None | chr6 | 45680685 | 45680863 | - | - |
gma-MIR171t | MI0019781 | None | chr6 | 49564865 | 49564981 | - | - |
gma-MIR2111e | MI0019782 | None | chr7 | 16470310 | 16470397 | - | - |
gma-MIR2111f | MI0019783 | None | chr7 | 16494867 | 16494949 | - | - |
gma-MIR394f | MI0019784 | None | chr8 | 9871233 | 9871316 | + | - |
gma-MIR171u | MI0019785 | None | chr8 | 923816 | 923917 | - | - |
gma-MIR399f | MI0019786 | None | chr8 | 9110335 | 9110442 | - | - |
gma-MIR399g | MI0019787 | None | chr8 | 9118325 | 9118459 | - | - |
gma-MIR395d | MI0019788 | None | chr8 | 41415505 | 41415625 | - | - |
gma-MIR395e | MI0019789 | None | chr8 | 41424558 | 41424674 | - | - |
gma-MIR395f | MI0019790 | None | chr8 | 41439069 | 41439190 | - | - |
gma-MIR395g | MI0019791 | None | chr8 | 41445444 | 41445571 | - | - |
gma-MIR166m | MI0019792 | None | chr9 | 36469526 | 36469701 | + | - |
gma-MIR5674b | MI0019793 | None | chr9 | 40101457 | 40101661 | + | - |
gma-MIR169u | MI0019794 | None | chr9 | 45847295 | 45847435 | - | - |
gma-MIR2606b | MI0019795 | None | KQ474241.1 | 6816 | 6998 | - | - |
gma-MIR399h | MI0019796 | None | chr9 | 36742439 | 36742552 | + | - |
mtr-MIR169i | MI0025203 | None | None | None | - | ||
mtr-MIR169r | MI0019683 | None | None | None | - | ||
gma-MIR1513d | MI0019725 | None | None | None | - |