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Apple miRNAs and tasiRNAs with novel regulatory networks |
|
|---|---|
| PubMed ID | 22704043 |
| Authors | Xia R, Zhu H, An YQ, Beers EP, Liu Z |
| Journal | Genome Biol |
| Volume | 13 |
| Pages | R47 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| mdm-MIR482a | MI0010695 | None | MDC002407.840 | 1569 | 1723 | + | - |
| mdm-MIR156a | MI0022971 | None | MDC010428.317 | 6230 | 6319 | + | - |
| mdm-MIR156b | MI0022972 | None | MDC015254.139 | 2153 | 2237 | + | - |
| mdm-MIR156c | MI0022973 | None | MDC010428.308 | 6929 | 7022 | + | - |
| mdm-MIR156d | MI0022974 | None | None | None | - | ||
| mdm-MIR156e | MI0022975 | None | MDC010428.318 | 17260 | 17349 | - | - |
| mdm-MIR156f | MI0022976 | None | MDC018927.245 | 11144 | 11353 | + | - |
| mdm-MIR156g | MI0022977 | None | None | None | - | ||
| mdm-MIR156h | MI0022978 | None | MDC010428.318 | 7629 | 7722 | - | - |
| mdm-MIR156i | MI0022979 | None | None | None | - | ||
| mdm-MIR156j | MI0022980 | None | MDC038184.5 | 20018 | 20105 | - | - |
| mdm-MIR156k | MI0022981 | None | MDC022169.138 | 7386 | 7530 | + | - |
| mdm-MIR156l | MI0022982 | None | None | None | - | ||
| mdm-MIR156m | MI0022983 | None | MDC013580.195 | 17840 | 17952 | - | - |
| mdm-MIR156n | MI0022984 | None | MDC022241.434 | 30158 | 30294 | - | - |
| mdm-MIR156o | MI0022985 | None | MDC011231.822 | 32335 | 32429 | + | - |
| mdm-MIR156p | MI0022986 | None | MDC007657.477 | 1820 | 1919 | - | - |
| mdm-MIR156q | MI0022987 | None | MDC018690.154 | 10956 | 11043 | + | - |
| mdm-MIR156r | MI0022988 | None | MDC012217.482 | 9920 | 10019 | + | - |
| mdm-MIR156s | MI0022989 | None | None | None | - | ||
| mdm-MIR156t | MI0022990 | None | MDC038783.9 | 1405 | 1496 | + | - |
| mdm-MIR156u | MI0022991 | None | MDC008280.307 | 1 | 91 | + | - |
| mdm-MIR156v | MI0022992 | None | MDC019519.287 | 735 | 825 | - | - |
| mdm-MIR156w | MI0022993 | None | MDC019519.284 | 5665 | 5754 | + | - |
| mdm-MIR156x | MI0022994 | None | None | None | - | ||
| mdm-MIR156y | MI0022995 | None | None | None | - | ||
| mdm-MIR156z | MI0022996 | None | None | None | - | ||
| mdm-MIR156aa | MI0022997 | None | MDC018442.71 | 5568 | 5655 | + | - |
| mdm-MIR156ab | MI0022998 | None | MDC002621.233 | 15612 | 15791 | + | - |
| mdm-MIR156ac | MI0022999 | None | MDC002441.399 | 5371 | 5626 | - | - |
| mdm-MIR156ad | MI0023000 | None | MDC013721.399 | 9376 | 9489 | + | - |
| mdm-MIR156ae | MI0023001 | None | MDC013721.403 | 6597 | 6710 | - | - |
| mdm-MIR159a | MI0023002 | None | MDC026449.10 | 321 | 489 | - | - |
| mdm-MIR159b | MI0023003 | None | MDC007814.270 | 550 | 718 | + | - |
| mdm-MIR160a | MI0023004 | None | MDC022902.474 | 1630 | 1712 | + | - |
| mdm-MIR160b | MI0023005 | None | MDC001923.221 | 16751 | 16839 | + | - |
| mdm-MIR160c | MI0023006 | None | MDC002994.270 | 8251 | 8338 | + | - |
| mdm-MIR160d | MI0023007 | None | MDC021168.418 | 2409 | 2497 | - | - |
| mdm-MIR160e | MI0023008 | None | MDC015910.528 | 6786 | 6873 | - | - |
| mdm-MIR162a | MI0023009 | None | MDC013824.133 | 9436 | 9528 | - | - |
| mdm-MIR162b | MI0023010 | None | MDC020136.407 | 72829 | 72922 | + | - |
| mdm-MIR164a | MI0023011 | None | MDC019151.253 | 7777 | 7880 | - | - |
| mdm-MIR164b | MI0023012 | None | None | None | - | ||
| mdm-MIR164c | MI0023013 | None | MDC022516.233 | 9079 | 9195 | + | - |
| mdm-MIR164d | MI0023014 | None | MDC010871.402 | 12521 | 12655 | - | - |
| mdm-MIR164e | MI0023015 | None | None | None | - | ||
| mdm-MIR164f | MI0023016 | None | MDC031214.7 | 16039 | 16208 | + | - |
| mdm-MIR166a | MI0023017 | None | MDC011683.626 | 7710 | 7881 | + | - |
| mdm-MIR166b | MI0023018 | None | None | None | - | ||
| mdm-MIR166c | MI0023019 | None | MDC006536.318 | 30433 | 30529 | + | - |
| mdm-MIR166d | MI0023020 | None | MDC009861.462 | 128 | 300 | + | - |
| mdm-MIR166e | MI0023021 | None | MDC019868.259 | 3882 | 3978 | - | - |
| mdm-MIR166f | MI0023022 | None | MDC001760.86 | 7664 | 7760 | - | - |
| mdm-MIR166g | MI0023023 | None | MDC020946.295 | 36550 | 36724 | + | - |
| mdm-MIR166h | MI0023024 | None | MDC012450.276 | 5153 | 5315 | + | - |
| mdm-MIR166i | MI0023025 | None | MDC019971.51 | 85 | 181 | + | - |
| mdm-MIR167a | MI0023026 | None | MDC002483.224 | 612 | 717 | + | - |
| mdm-MIR167b | MI0023027 | None | MDC000702.551 | 31958 | 32077 | + | - |
| mdm-MIR167c | MI0023028 | None | MDC000702.551 | 40612 | 40692 | + | - |
| mdm-MIR167d | MI0023029 | None | MDC016665.144 | 23201 | 23305 | + | - |
| mdm-MIR167e | MI0023030 | None | MDC016665.144 | 18208 | 18331 | + | - |
| mdm-MIR167f | MI0023031 | None | MDC006026.285 | 8688 | 8933 | - | - |
| mdm-MIR167g | MI0023032 | None | MDC015374.161 | 8805 | 8971 | - | - |
| mdm-MIR167h | MI0023033 | None | MDC015051.52 | 15449 | 15554 | - | - |
| mdm-MIR167i | MI0023034 | None | None | None | - | ||
| mdm-MIR167j | MI0023035 | None | MDC017525.223 | 4367 | 4505 | + | - |
| mdm-MIR168a | MI0023036 | None | MDC036375.12 | 8051 | 8193 | + | - |
| mdm-MIR168b | MI0023037 | None | MDC019425.247 | 3213 | 3404 | + | - |
| mdm-MIR169a | MI0023038 | None | MDC044115.7 | 12507 | 12664 | - | - |
| mdm-MIR169b | MI0023039 | None | MDC011066.417 | 15262 | 15452 | + | - |
| mdm-MIR169c | MI0023040 | None | MDC001494.456 | 32568 | 32767 | - | - |
| mdm-MIR169d | MI0023041 | None | MDC013464.188 | 2524 | 2723 | + | - |
| mdm-MIR171a | MI0023042 | None | None | None | - | ||
| mdm-MIR171b | MI0023043 | None | MDC000665.236 | 903 | 995 | + | - |
| mdm-MIR171c | MI0023044 | None | MDC013694.297 | 5292 | 5413 | + | - |
| mdm-MIR171d | MI0023045 | None | MDC022292.401 | 1529 | 1648 | + | - |
| mdm-MIR171e | MI0023046 | None | MDC015573.110 | 10077 | 10218 | + | - |
| mdm-MIR171f | MI0023047 | None | MDC008930.262 | 37773 | 37874 | - | - |
| mdm-MIR171g | MI0023048 | None | MDC016463.170 | 5131 | 5205 | - | - |
| mdm-MIR171h | MI0023049 | None | MDC021781.288 | 48455 | 48530 | + | - |
| mdm-MIR171i | MI0023050 | None | MDC018836.211 | 24237 | 24391 | + | - |
| mdm-MIR171j | MI0023051 | None | MDC023274.72 | 10076 | 10164 | + | - |
| mdm-MIR171k | MI0023052 | None | MDC002905.342 | 5466 | 5564 | - | - |
| mdm-MIR171l | MI0023053 | None | MDC019692.26 | 10871 | 10969 | + | - |
| mdm-MIR171m | MI0023054 | None | None | None | - | ||
| mdm-MIR171n | MI0023055 | None | None | None | - | ||
| mdm-MIR172a | MI0023056 | None | None | None | - | ||
| mdm-MIR172b | MI0023057 | None | MDC001582.391 | 7037 | 7151 | - | - |
| mdm-MIR172c | MI0023058 | None | MDC029091.9 | 7611 | 7725 | - | - |
| mdm-MIR172d | MI0023059 | None | MDC010472.239 | 30030 | 30162 | + | - |
| mdm-MIR172e | MI0023060 | None | MDC030881.6 | 7973 | 8104 | + | - |
| mdm-MIR172f | MI0023061 | None | MDC024416.57 | 17180 | 17312 | - | - |
| mdm-MIR172g | MI0023062 | None | MDC007034.256 | 4273 | 4377 | - | - |
| mdm-MIR172h | MI0023063 | None | MDC010740.415 | 456 | 560 | + | - |
| mdm-MIR172i | MI0023064 | None | MDC010058.302 | 7690 | 7870 | + | - |
| mdm-MIR172j | MI0023065 | None | MDC029352.13 | 1932 | 2112 | - | - |
| mdm-MIR172k | MI0023066 | None | MDC029352.33 | 3377 | 3557 | + | - |
| mdm-MIR172l | MI0023067 | None | MDC017644.159 | 13803 | 13984 | + | - |
| mdm-MIR172m | MI0023068 | None | None | None | - | ||
| mdm-MIR172n | MI0023069 | None | None | None | - | ||
| mdm-MIR172o | MI0023070 | None | None | None | - | ||
| mdm-MIR319a | MI0023071 | None | MDC020913.219 | 9978 | 10172 | - | - |
| mdm-MIR319b | MI0023072 | None | MDC008903.290 | 17094 | 17286 | + | - |
| mdm-MIR390a | MI0023073 | None | MDC019512.230 | 19835 | 19959 | + | - |
| mdm-MIR390b | MI0023074 | None | MDC018186.206 | 2564 | 2666 | - | - |
| mdm-MIR390c | MI0023075 | None | MDC001220.292 | 9552 | 9679 | + | - |
| mdm-MIR390d | MI0023076 | None | None | None | - | ||
| mdm-MIR390e | MI0023077 | None | MDC000913.252 | 3959 | 4061 | + | - |
| mdm-MIR390f | MI0023078 | None | MDC000913.253 | 2561 | 2663 | + | - |
| mdm-MIR393a | MI0023079 | None | MDC019461.80 | 14961 | 15079 | + | - |
| mdm-MIR393b | MI0023080 | None | MDC005391.194 | 11328 | 11458 | + | - |
| mdm-MIR393c | MI0023081 | None | MDC005391.195 | 248 | 378 | + | - |
| mdm-MIR394a | MI0023082 | None | MDC016924.31 | 605 | 752 | + | - |
| mdm-MIR394b | MI0023083 | None | MDC005660.433 | 19401 | 19638 | - | - |
| mdm-MIR395a | MI0023084 | None | MDC003768.152 | 26163 | 26255 | - | - |
| mdm-MIR395b | MI0023085 | None | MDC003846.250 | 18712 | 18848 | + | - |
| mdm-MIR395c | MI0023086 | None | MDC003846.249 | 6394 | 6521 | + | - |
| mdm-MIR395d | MI0023087 | None | MDC003846.250 | 17630 | 17771 | - | - |
| mdm-MIR395e | MI0023088 | None | MDC003846.250 | 1344 | 1471 | - | - |
| mdm-MIR395f | MI0023089 | None | MDC010785.280 | 5883 | 6010 | - | - |
| mdm-MIR395g | MI0023090 | None | MDC003846.250 | 11880 | 12031 | + | - |
| mdm-MIR395h | MI0023091 | None | MDC003846.250 | 12137 | 12240 | + | - |
| mdm-MIR395i | MI0023092 | None | MDC003768.152 | 37677 | 37780 | + | - |
| mdm-MIR396a | MI0023093 | None | MDC003523.387 | 32684 | 32832 | - | - |
| mdm-MIR396b | MI0023094 | None | MDC016069.205 | 14552 | 14719 | - | - |
| mdm-MIR396c | MI0023095 | None | MDC003523.387 | 23887 | 23993 | + | - |
| mdm-MIR396d | MI0023096 | None | MDC016069.205 | 8556 | 8658 | + | - |
| mdm-MIR396e | MI0023097 | None | None | None | - | ||
| mdm-MIR396f | MI0023098 | None | MDC001261.116 | 9150 | 9302 | + | - |
| mdm-MIR396g | MI0023099 | None | None | None | - | ||
| mdm-MIR397a | MI0023100 | None | MDC000805.395 | 32063 | 32163 | - | - |
| mdm-MIR397b | MI0023101 | None | MDC000270.326 | 755 | 876 | + | - |
| mdm-MIR398a | MI0023102 | None | MDC009194.120 | 3529 | 3665 | + | - |
| mdm-MIR398b | MI0023103 | None | MDC014136.296 | 3441 | 3538 | - | - |
| mdm-MIR398c | MI0023104 | None | MDC015053.133 | 10556 | 10656 | - | - |
| mdm-MIR399a | MI0023105 | None | MDC012194.254 | 2496 | 2610 | + | - |
| mdm-MIR399b | MI0023106 | None | MDC009537.404 | 9792 | 9898 | + | - |
| mdm-MIR399c | MI0023107 | None | None | None | - | ||
| mdm-MIR399d | MI0023108 | None | MDC001546.348 | 8228 | 8364 | - | - |
| mdm-MIR399e | MI0023109 | None | MDC009537.404 | 16273 | 16396 | - | - |
| mdm-MIR399f | MI0023110 | None | MDC029294.8 | 1864 | 1987 | - | - |
| mdm-MIR399g | MI0023111 | None | MDC019485.283 | 20228 | 20350 | - | - |
| mdm-MIR399h | MI0023112 | None | MDC021118.72 | 3807 | 3929 | - | - |
| mdm-MIR399i | MI0023113 | None | MDC008043.242 | 29962 | 30075 | + | - |
| mdm-MIR399j | MI0023114 | None | MDC001015.251 | 15588 | 15710 | + | - |
| mdm-MIR403a | MI0023115 | None | MDC006429.384 | 17645 | 17759 | + | - |
| mdm-MIR403b | MI0023116 | None | MDC002523.549 | 17325 | 17438 | - | - |
| mdm-MIR408a | MI0023117 | None | MDC006505.260 | 3714 | 3836 | - | - |
| mdm-MIR2111a | MI0023118 | None | MDC000075.129 | 2663 | 2757 | + | - |
| mdm-MIR2111b | MI0023119 | None | MDC000075.131 | 9757 | 9866 | - | - |
| mdm-MIR3627a | MI0023120 | None | MDC007724.222 | 3945 | 4029 | - | - |
| mdm-MIR3627b | MI0023121 | None | MDC010881.251 | 3172 | 3258 | + | - |
| mdm-MIR3627c | MI0023122 | None | MDC006958.369 | 10898 | 10986 | + | - |
| mdm-MIR391 | MI0023123 | None | MDC009976.353 | 25894 | 25990 | - | - |
| mdm-MIR477b | MI0023124 | None | MDC024949.20 | 9572 | 9668 | + | - |
| mdm-MIR477a | MI0023125 | None | MDC024949.20 | 9404 | 9508 | + | - |
| mdm-MIR482b | MI0023126 | None | None | None | - | ||
| mdm-MIR482c | MI0023127 | None | None | None | - | ||
| mdm-MIR535a | MI0023128 | None | MDC012353.216 | 34184 | 34278 | + | - |
| mdm-MIR535b | MI0023129 | None | MDC005729.245 | 16577 | 16671 | - | - |
| mdm-MIR535c | MI0023130 | None | MDC011978.180 | 7817 | 7899 | - | - |
| mdm-MIR535d | MI0023131 | None | MDC011049.358 | 3593 | 3687 | + | - |
| mdm-MIR827 | MI0023132 | None | MDC007691.315 | 6054 | 6234 | + | - |
| mdm-MIR828a | MI0023133 | None | MDC012097.538 | 5508 | 5649 | - | - |
| mdm-MIR828b | MI0023134 | None | MDC003205.158 | 33351 | 33508 | + | - |
| mdm-MIR408b | MI0023135 | None | MDC006859.349 | 17335 | 17419 | - | - |
| mdm-MIR408c | MI0023136 | None | None | None | - | ||
| mdm-MIR408d | MI0023137 | None | MDC016595.160 | 1340 | 1424 | + | - |
| mdm-MIR2118a | MI0023138 | None | MDC017130.228 | 6718 | 6868 | + | - |
| mdm-MIR2118b | MI0023139 | None | MDC019300.125 | 1293 | 1398 | - | - |
| mdm-MIR2118c | MI0023140 | None | MDC019300.66 | 1879 | 1981 | - | - |
| mdm-MIR7120a | MI0023141 | None | MDC017840.207 | 3632 | 3812 | + | - |
| mdm-MIR7120b | MI0023142 | None | MDC019554.272 | 10041 | 10221 | - | - |
| mdm-MIR482d | MI0023143 | None | None | None | - | ||
| mdm-MIR7121a | MI0023144 | None | MDC009272.709 | 4104 | 4235 | - | - |
| mdm-MIR7121b | MI0023145 | None | MDC009272.711 | 1182 | 1353 | - | - |
| mdm-MIR7121c | MI0023146 | None | None | None | - | ||
| mdm-MIR7121d | MI0023147 | None | MDC006081.961 | 378 | 498 | - | - |
| mdm-MIR7121e | MI0023148 | None | MDC006416.180 | 729 | 849 | - | - |
| mdm-MIR7121f | MI0023149 | None | MDC009272.295 | 603 | 690 | + | - |
| mdm-MIR7121g | MI0023150 | None | MDC009272.679 | 779 | 878 | - | - |
| mdm-MIR7121h | MI0023151 | None | MDC027090.15 | 1068 | 1188 | + | - |
| mdm-MIR7122a | MI0023152 | None | MDC009778.59 | 4653 | 4774 | - | - |
| mdm-MIR7122b | MI0023153 | None | MDC022484.54 | 139 | 260 | - | - |
| mdm-MIR7123a | MI0023154 | None | MDC001018.301 | 2446 | 2628 | + | - |
| mdm-MIR7123b | MI0023155 | None | MDC010449.276 | 9258 | 9440 | + | - |
| mdm-MIR5225c | MI0023156 | None | MDC011178.406 | 16627 | 16745 | - | - |
| mdm-MIR159c | MI0023157 | None | None | None | - | ||
| mdm-MIR7124a | MI0023158 | None | MDC001716.95 | 7472 | 7623 | + | - |
| mdm-MIR7124b | MI0023159 | None | None | None | - | ||
| mdm-MIR5225a | MI0023160 | None | MDC003092.251 | 8862 | 9005 | + | - |
| mdm-MIR5225b | MI0023161 | None | MDC003092.253 | 6584 | 6727 | + | - |
| mdm-MIR319c | MI0023162 | None | MDC009318.175 | 3694 | 3869 | + | - |
| mdm-MIR7125 | MI0023163 | None | MDC008558.180 | 6437 | 6543 | + | - |
| mdm-MIR7126 | MI0023164 | None | MDC014075.204 | 25952 | 26102 | - | - |
| mdm-MIR393d | MI0023165 | None | None | None | - | ||
| mdm-MIR393e | MI0023166 | None | None | None | - | ||
| mdm-MIR393f | MI0023167 | None | None | None | - | ||
| mdm-MIR7127a | MI0023168 | None | MDC012422.128 | 844 | 975 | + | - |
| mdm-MIR7127b | MI0023169 | None | None | None | - | ||
| mdm-MIR171o | MI0023170 | None | None | None | - | ||
| mdm-MIR169e | MI0023171 | None | None | None | - | ||
| mdm-MIR169f | MI0023172 | None | MDC001494.456 | 32862 | 33044 | - | - |
| mdm-MIR7128 | MI0023173 | None | MDC006081.432 | 212 | 307 | + | - |
| mdm-MIR858 | MI0023174 | None | MDC007244.288 | 7393 | 8313 | + | - |
| mdm-MIR1511 | MI0023292 | None | MDC009780.211 | 2054 | 2180 | - | - |
| mdm-MIR3627d | MI0035589 | None | MDC006958.369 | 10681 | 10770 | + | - |
| mdm-MIR159d | MI0035594 | None | MDC001900.112 | 17252 | 17462 | + | - |
| mdm-MIR159e | MI0035595 | None | MDC011193.361 | 3986 | 4239 | - | - |
| mdm-MIR159f | MI0035596 | None | MDC011193.509 | 3014 | 3247 | - | - |
| mdm-MIR399k | MI0035604 | None | MDC018343.157 | 12734 | 12869 | + | - |
| mdm-MIR319d | MI0035606 | None | MDC016620.357 | 18381 | 18517 | + | - |
| mdm-MIR319e | MI0035621 | None | MDC002990.685 | 6834 | 7040 | + | - |
| mdm-MIR319f | MI0035622 | None | MDC009430.318 | 14032 | 14238 | - | - |
| mdm-MIR319g | MI0035623 | None | MDC011566.500 | 5042 | 5349 | - | - |
| mdm-MIR319h | MI0035648 | None | MDC004434.326 | 8757 | 8949 | + | - |
| mdm-MIR172p | MI0035671 | None | MDC020608.143 | 3762 | 3877 | - | - |