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Identification of novel and conserved miRNAs involved in pollen development in Brassica campestris ssp. chinensis by high-throughput sequencing and degradome analysis |
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|---|---|
| PubMed ID | 24559317 |
| Authors | Jiang J, Lv M, Liang Y, Ma Z, Cao J |
| Journal | BMC Genomics |
| Volume | 15 |
| Pages | 146 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| bra-MIR824 | MI0006439 | None | chrA3 | 25613141 | 25613772 | + | - |
| bra-MIR157a | MI0010648 | None | None | None | - | ||
| bra-MIR164a | MI0010651 | None | chrA5 | 150875 | 150966 | - | - |
| bra-MIR167b | MI0010653 | None | chrA1 | 19998656 | 19998787 | - | - |
| bra-MIR171b | MI0010657 | None | chrA9 | 34811767 | 34811870 | + | - |
| bra-MIR171e | MI0010660 | None | chrA3 | 21911195 | 21911313 | + | - |
| bra-MIR172a | MI0010661 | None | chrA2 | 2013332 | 2013450 | - | - |
| bra-MIR5718 | MI0019330 | None | chrA9 | 4446439 | 4446672 | + | - |
| bra-MIR1140 | MI0019335 | None | chrA3 | 683631 | 683805 | + | - |
| bra-MIR9552a | MI0029296 | None | chrA8 | 9143909 | 9144122 | + | - |
| bra-MIR9552b | MI0029297 | None | chrA8 | 9143815 | 9144063 | - | - |
| bra-MIR9408 | MI0029298 | None | chrA1 | 9651914 | 9652053 | - | - |
| bra-MIR9553 | MI0029299 | None | chrA1 | 7994267 | 7994454 | + | - |
| bra-MIR9554 | MI0029300 | None | chrA6 | 18355807 | 18355956 | + | - |
| bra-MIR9555a | MI0029301 | None | chrA7 | 22508145 | 22508351 | - | - |
| bra-MIR9556 | MI0029302 | None | chrA7 | 19158445 | 19158534 | - | - |
| bra-MIR9557 | MI0029303 | None | chrA7 | 1046108 | 1046295 | - | - |
| bra-MIR9558 | MI0029304 | None | chrA3 | 16624842 | 16624987 | - | - |
| bra-MIR9559 | MI0029305 | None | chrA4 | 346426 | 346534 | + | - |
| bra-MIR9560a | MI0029306 | None | chrA9 | 1983782 | 1983913 | + | - |
| bra-MIR9560b | MI0029307 | None | chrA6 | 18161518 | 18161653 | + | - |
| bra-MIR9561 | MI0029308 | None | chrA3 | 13865321 | 13865443 | - | - |
| bra-MIR9555b | MI0029309 | None | chrA1 | 12276529 | 12276741 | - | - |
| bra-MIR9562 | MI0029310 | None | chrA2 | 18896191 | 18896339 | + | - |
| bra-MIR408 | MI0029311 | None | chrA5 | 364768 | 364935 | + | - |
| bra-MIR9563a | MI0029312 | None | chrA1 | 26607663 | 26607829 | - | - |
| bra-MIR9564 | MI0029313 | None | chrA1 | 24271248 | 24271480 | + | - |
| bra-MIR9565 | MI0029314 | None | chrA9 | 3447485 | 3447628 | - | - |
| bra-MIR9566 | MI0029315 | None | chrA1 | 4945796 | 4946013 | - | - |
| bra-MIR9567 | MI0029316 | None | chrA3 | 17824435 | 17824572 | + | - |
| bra-MIR9563b | MI0029317 | None | chrA9 | 27203625 | 27203862 | + | - |
| bra-MIR9568 | MI0029318 | None | chrA3 | 14094126 | 14094275 | + | - |
| bra-MIR9569 | MI0029319 | None | chrA3 | 27699619 | 27699810 | - | - |
| bra-MIR158 | MI0029320 | None | chrA8 | 3271798 | 3271904 | + | - |
| bra-MIR156a | MI0030547 | None | chrA2 | 2983764 | 2983891 | + | - |
| bra-MIR156b | MI0030548 | None | chrA6 | 17880337 | 17880458 | + | - |
| bra-MIR156c | MI0030549 | None | chrA3 | 28490294 | 28490397 | - | - |
| bra-MIR156d | MI0030550 | None | chrA6 | 17880586 | 17880682 | + | - |
| bra-MIR156e | MI0030551 | None | chrA8 | 13509380 | 13509498 | - | - |
| bra-MIR156f | MI0030552 | None | chrA9 | 31078747 | 31078923 | + | - |
| bra-MIR156g | MI0030553 | None | chrA1 | 2836909 | 2837018 | + | - |
| bra-MIR162 | MI0030554 | None | chrA3 | 21022093 | 21022218 | + | - |
| bra-MIR168b | MI0030555 | None | chrA1 | 5387909 | 5388035 | + | - |
| bra-MIR168c | MI0030556 | None | chrA3 | 23668240 | 23668372 | + | - |
| bra-MIR168a | MI0030557 | None | chrA6 | 25084101 | 25084233 | + | - |
| bra-MIR319 | MI0030558 | None | chrA1 | 7428122 | 7428320 | + | - |
| bra-MIR390 | MI0030559 | None | chrA4 | 16514660 | 16514764 | + | - |
| bra-MIR391 | MI0030560 | None | chrA10 | 9284925 | 9285028 | + | - |
| bra-MIR395d | MI0030561 | None | chrA2 | 11572546 | 11572653 | - | - |
| bra-MIR395b | MI0030562 | None | chrA7 | 18563029 | 18563122 | - | - |
| bra-MIR395c | MI0030563 | None | chrA7 | 18568920 | 18569029 | - | - |
| bra-MIR395a | MI0030564 | None | chrA8 | 17814983 | 17815075 | - | - |
| bra-MIR396 | MI0030565 | None | chrA8 | 8319788 | 8319949 | - | - |
| bra-MIR398 | MI0030566 | None | chrA3 | 2736128 | 2736251 | + | - |
| bra-MIR400 | MI0030567 | None | chrA9 | 20034113 | 20034253 | - | - |
| bra-MIR403 | MI0030568 | None | chrA5 | 266420 | 266530 | - | - |
| bra-MIR860 | MI0030569 | None | chrA6 | 17845504 | 17845618 | + | - |
| bra-MIR6032 | MI0030570 | None | chrA2 | 7680879 | 7680978 | - | - |
| bra-MIR164b | MI0030571 | None | chrA2 | 24491315 | 24491426 | + | - |
| bra-MIR164d | MI0030572 | None | chrA6 | 18241365 | 18241474 | - | - |
| bra-MIR164c | MI0030573 | None | chrA9 | 2025610 | 2025700 | - | - |
| bra-MIR164e | MI0030574 | None | chrA1 | 25366674 | 25366787 | - | - |
| bra-MIR172c | MI0030575 | None | chrA9 | 27738162 | 27738313 | + | - |
| bra-MIR2111 | MI0030576 | None | chrA1 | 27648068 | 27648204 | - | - |
| bra-MIR172d | MI0030577 | None | chrA3 | 4762900 | 4762994 | - | - |
| bra-MIR161 | MI0030578 | None | chrA5 | 12400028 | 12400158 | - | - |
| bra-MIR1885a | MI0008302 | None | chrA6 | 25298379 | 25298698 | + | - |
| bra-MIR159a | MI0010649 | None | chrA7 | 15273666 | 15273850 | + | - |
| bra-MIR160a | MI0010650 | None | chrA5 | 3222211 | 3222337 | - | - |
| bra-MIR171a | MI0010656 | None | chrA1 | 22648705 | 22648789 | - | - |
| bra-MIR171c | MI0010658 | None | chrA8 | 20120996 | 20121083 | + | - |
| bra-MIR171d | MI0010659 | None | chrA6 | 4092008 | 4092108 | - | - |
| bra-MIR172b | MI0010662 | None | None | None | - | ||
| bra-MIR1885b | MI0019329 | None | None | None | - | ||
| bra-MIR5724 | MI0019337 | None | chrA8 | 13793832 | 13794141 | + | - |