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Bioinformatic prediction, deep sequencing of microRNAs and expression analysis during phenotypic plasticity in the pea aphid, Acyrthosiphon pisum |
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|---|---|
| PubMed ID | 20444247 |
| Authors | Legeai F, Rizk G, Walsh T, Edwards O, Gordon K, Lavenier D, Leterme N, Méreau A, Nicolas J, Tagu D, Jaubert-Possamai S |
| Journal | BMC Genomics |
| Volume | 11 |
| Pages | 281 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| api-mir-137 | MI0013352 | None | GL349951.1 | 311432 | 311513 | + | - |
| api-mir-190 | MI0013353 | None | GL350285.1 | 84177 | 84244 | - | - |
| api-mir-10 | MI0013354 | None | GL350757.1 | 17838 | 17920 | + | - |
| api-bantam | MI0013356 | None | GL349821.1 | 48793 | 48863 | + | - |
| api-mir-184a | MI0013358 | None | GL350713.1 | 96305 | 96369 | + | - |
| api-mir-276 | MI0013359 | None | GL350277.1 | 351893 | 351969 | + | - |
| api-mir-993 | MI0013361 | None | GL349666.1 | 1740245 | 1740332 | + | - |
| api-mir-100 | MI0013878 | None | GL350266.1 | 135163 | 135261 | + | - |
| api-let-7 | MI0013908 | None | GL350266.1 | 136852 | 136914 | + | - |
| api-mir-1 | MI0013909 | None | GL350503.1 | 79303 | 79384 | + | - |
| api-mir-1000 | MI0013910 | None | GL349899.1 | 512678 | 512742 | + | - |
| api-mir-124 | MI0013911 | None | GL350151.1 | 56406 | 56465 | - | - |
| api-mir-13a | MI0013912 | None | GL349742.1 | 367742 | 367802 | + | - |
| api-mir-14 | MI0013913 | None | GL349777.1 | 408822 | 408919 | - | - |
| api-mir-184b | MI0013914 | None | GL350175.1 | 151852 | 151911 | + | - |
| api-mir-210 | MI0013915 | None | GL350019.1 | 289988 | 290028 | + | - |
| api-mir-219 | MI0013917 | None | GL350104.1 | 328254 | 328337 | + | - |
| api-mir-263a | MI0013918 | None | GL349685.1 | 873342 | 873407 | - | - |
| api-mir-252a | MI0013919 | None | GL349872.1 | 519999 | 520063 | + | - |
| api-mir-263b | MI0013920 | None | GL349685.1 | 845892 | 845953 | - | - |
| api-mir-275 | MI0013921 | None | GL350222.1 | 161796 | 161857 | + | - |
| api-mir-277 | MI0013922 | None | GL349754.1 | 855885 | 855963 | + | - |
| api-mir-278 | MI0013923 | None | GL349849.1 | 357516 | 357581 | - | - |
| api-mir-279a | MI0013924 | None | GL349806.1 | 546384 | 546447 | - | - |
| api-mir-279b | MI0013925 | None | GL349674.1 | 320342 | 320401 | - | - |
| api-mir-29 | MI0013926 | None | GL350634.1 | 49544 | 49607 | + | - |
| api-mir-2a | MI0013927 | None | GL349742.1 | 368362 | 368423 | + | - |
| api-mir-2b | MI0013928 | None | GL349742.1 | 368487 | 368567 | + | - |
| api-mir-2c | MI0013929 | None | GL349742.1 | 367625 | 367689 | + | - |
| api-mir-307 | MI0013930 | None | GL350510.1 | 73409 | 73469 | - | - |
| api-mir-315 | MI0013932 | None | GL350261.1 | 57410 | 57474 | - | - |
| api-mir-316 | MI0013933 | None | GL349950.1 | 102463 | 102524 | + | - |
| api-mir-317 | MI0013934 | None | GL349754.1 | 848266 | 848342 | + | - |
| api-mir-34 | MI0013935 | None | GL349754.1 | 863528 | 863595 | + | - |
| api-mir-7 | MI0013936 | None | GL349691.1 | 921851 | 921920 | + | - |
| api-mir-71 | MI0013937 | None | GL349742.1 | 367510 | 367571 | + | - |
| api-mir-981 | MI0013938 | None | GL349816.1 | 103288 | 103352 | + | - |
| api-mir-8 | MI0013939 | None | GL349795.1 | 1044256 | 1044318 | - | - |
| api-mir-87b | MI0013940 | None | GL349666.1 | 1446143 | 1446205 | + | - |
| api-mir-87a | MI0013941 | None | GL349666.1 | 1445999 | 1446064 | + | - |
| api-mir-927 | MI0013942 | None | GL349685.1 | 676583 | 676641 | - | - |
| api-mir-929 | MI0013943 | None | GL349683.1 | 424027 | 424086 | - | - |
| api-mir-92a-1 | MI0013944 | None | GL350511.1 | 42264 | 42330 | + | - |
| api-mir-92a-2 | MI0013945 | None | GL364522.1 | 5137 | 5203 | - | - |
| api-mir-92b-1 | MI0013946 | None | GL350511.1 | 42426 | 42507 | + | - |
| api-mir-92b-2 | MI0013947 | None | GL364522.1 | 4960 | 5041 | - | - |
| api-mir-965 | MI0013948 | None | GL351142.1 | 47370 | 47430 | - | - |
| api-mir-971 | MI0013949 | None | GL350500.1 | 197684 | 197743 | + | - |
| api-mir-996 | MI0013951 | None | GL350191.1 | 494537 | 494596 | - | - |
| api-mir-998 | MI0013953 | None | GL349823.1 | 315079 | 315137 | - | - |
| api-mir-9a | MI0013954 | None | GL349752.1 | 521148 | 521214 | - | - |
| api-mir-9b | MI0013955 | None | GL350203.1 | 471721 | 471784 | + | - |
| api-mir-3015a-1 | MI0013956 | None | GL349758.1 | 530108 | 530165 | + | - |
| api-mir-3015a-2 | MI0013957 | None | GL350299.1 | 69452 | 69503 | + | - |
| api-mir-3016 | MI0013958 | None | GL350117.1 | 223456 | 223518 | - | - |
| api-mir-3017a | MI0013959 | None | GL351009.1 | 15608 | 15662 | + | - |
| api-mir-3015b | MI0013960 | None | GL349654.1 | 184591 | 184653 | + | - |
| api-mir-3018 | MI0013961 | None | GL349796.1 | 827920 | 827977 | + | - |
| api-mir-3019 | MI0013962 | None | GL350522.1 | 253932 | 253992 | + | - |
| api-mir-3020 | MI0013963 | None | GL350475.1 | 216414 | 216477 | - | - |
| api-mir-3021-1 | MI0013964 | None | GL349630.1 | 1695084 | 1695150 | + | - |
| api-mir-3022 | MI0013965 | None | GL349928.1 | 465371 | 465435 | + | - |
| api-mir-3023 | MI0013966 | None | GL350151.1 | 170256 | 170316 | - | - |
| api-mir-3024 | MI0013967 | None | GL350117.1 | 223576 | 223639 | - | - |
| api-mir-3025 | MI0013968 | None | GL349666.1 | 411628 | 411692 | + | - |
| api-mir-3026 | MI0013969 | None | GL350206.1 | 203579 | 203638 | - | - |
| api-mir-3027 | MI0013970 | None | GL350604.1 | 163757 | 163817 | - | - |
| api-mir-3028 | MI0013971 | None | GL349734.1 | 790873 | 790934 | - | - |
| api-mir-3029 | MI0013972 | None | GL349928.1 | 621458 | 621518 | + | - |
| api-mir-3030 | MI0013973 | None | GL349928.1 | 618630 | 618692 | + | - |
| api-mir-3031 | MI0013974 | None | GL350343.1 | 72875 | 72933 | + | - |
| api-mir-3032 | MI0013975 | None | GL350117.1 | 224322 | 224383 | - | - |
| api-mir-3033 | MI0013976 | None | GL349746.1 | 734952 | 735012 | + | - |
| api-mir-3034 | MI0013977 | None | GL349659.1 | 545704 | 545774 | + | - |
| api-mir-3035-1 | MI0013979 | None | GL350967.1 | 60829 | 60897 | + | - |
| api-mir-3035-2 | MI0013980 | None | GL350967.1 | 71189 | 71257 | + | - |
| api-mir-252b | MI0013981 | None | GL349872.1 | 513369 | 513431 | + | - |
| api-mir-3036-1 | MI0013982 | None | GL349621.1 | 186094 | 186151 | - | - |
| api-mir-3036-2 | MI0013983 | None | GL349621.1 | 186257 | 186314 | - | - |
| api-mir-3036-3 | MI0013984 | None | GL349621.1 | 185609 | 185666 | - | - |
| api-mir-3036-4 | MI0013985 | None | GL349621.1 | 185771 | 185828 | - | - |
| api-mir-3036-5 | MI0013986 | None | GL349621.1 | 185932 | 185989 | - | - |
| api-mir-3037 | MI0013987 | None | GL350343.1 | 71782 | 71844 | + | - |
| api-mir-3038 | MI0013988 | None | GL350549.1 | 145537 | 145598 | + | - |
| api-mir-306 | MI0013989 | None | GL350203.1 | 472830 | 472890 | + | - |
| api-mir-3039 | MI0013990 | None | GL350173.1 | 213598 | 213657 | + | - |
| api-mir-3040 | MI0013991 | None | GL349988.1 | 223337 | 223400 | + | - |
| api-mir-3041 | MI0013992 | None | GL349928.1 | 621192 | 621257 | + | - |
| api-mir-3042 | MI0013993 | None | GL349736.1 | 585356 | 585419 | - | - |
| api-mir-3043-1 | MI0013994 | None | GL349650.1 | 609772 | 609835 | - | - |
| api-mir-3043-2 | MI0013995 | None | GL349650.1 | 611113 | 611176 | - | - |
| api-mir-3043-3 | MI0013996 | None | GL349650.1 | 612449 | 612512 | - | - |
| api-mir-3044 | MI0013997 | None | GL350497.1 | 47125 | 47186 | - | - |
| api-mir-3017b-1 | MI0013998 | None | GL349670.1 | 628441 | 628505 | + | - |
| api-mir-3017b-2 | MI0013999 | None | GL369328.1 | 10782 | 10846 | - | - |
| api-mir-3017b-3 | MI0014000 | None | GL349840.1 | 302522 | 302591 | + | - |
| api-mir-3045a | MI0014001 | None | GL349624.1 | 1900945 | 1901018 | - | - |
| api-mir-3046 | MI0014002 | None | GL349624.1 | 47150 | 47221 | - | - |
| api-mir-3047-1 | MI0014003 | None | GL350343.1 | 72020 | 72080 | + | - |
| api-mir-3047-2 | MI0014004 | None | GL350343.1 | 73002 | 73062 | + | - |
| api-mir-2765 | MI0014005 | None | GL349988.1 | 223177 | 223238 | + | - |
| api-mir-3048 | MI0014006 | None | GL349795.1 | 771724 | 771784 | + | - |
| api-mir-3049 | MI0014007 | None | GL349641.1 | 802520 | 802591 | + | - |
| api-mir-2796 | MI0014008 | None | GL350032.1 | 229555 | 229617 | - | - |
| api-mir-3050 | MI0014009 | None | GL349674.1 | 1167920 | 1167981 | + | - |
| api-mir-3051-1 | MI0014010 | None | GL349714.1 | 1085537 | 1085613 | - | - |
| api-mir-3051-2 | MI0014011 | None | GL350503.1 | 32349 | 32425 | + | - |
| api-mir-3052 | MI0014012 | None | GL349667.1 | 508338 | 508406 | + | - |
| api-mir-3015c | MI0014013 | None | GL350550.1 | 174339 | 174395 | - | - |
| api-mir-3053 | MI0014015 | None | GL350117.1 | 223099 | 223161 | - | - |
| api-mir-3045b | MI0014016 | None | GL349906.1 | 210741 | 210815 | - | - |
| api-mir-3054 | MI0014017 | None | GL349677.1 | 657048 | 657128 | + | - |
| api-mir-3055-1 | MI0014018 | None | GL349643.1 | 1800302 | 1800359 | - | - |
| api-mir-3056 | MI0014019 | None | GL349817.1 | 280472 | 280522 | + | - |
| api-mir-3055-2 | MI0031732 | None | GL349643.1 | 1800731 | 1800788 | - | - |
| api-mir-3055-3 | MI0031733 | None | GL349643.1 | 1802233 | 1802290 | - | - |
| api-mir-3055-4 | MI0031734 | None | GL349643.1 | 1803738 | 1803795 | - | - |
| api-mir-3055-5 | MI0031735 | None | GL349643.1 | 1806105 | 1806162 | - | - |
| api-mir-3021-2 | MI0031736 | None | GL349658.1 | 813385 | 813451 | - | - |
| api-mir-3021-3 | MI0031737 | None | GL369494.1 | 292 | 358 | - | - |
| api-mir-971-2 | MI0013950 | None | None | None | - | ||
| api-mir-3034-2 | MI0013978 | None | None | None | - | ||
| api-mir-210-2 | MI0013916 | None | None | None | - | ||
| api-mir-996-2 | MI0013952 | None | None | None | - | ||
| api-mir-307-2 | MI0013931 | None | None | None | - | ||
| api-mir-3015c-2 | MI0014014 | None | None | None | - |