1 Differential expression of porcine microRNAs in African swine fever virus infected pigs: a proof-of-concept study
Núñez-Hernández F, Pérez LJ, Muñoz M, Vera G, Accensi F, Sánchez A, Rodríguez F, Núñez JI
Virol J (2017) 14:198
score: 77

Other hairpins from this paper: ssc-mir-122, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-145, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-23a, ssc-mir-23b, ssc-mir-30d, ssc-mir-30e, ssc-mir-451, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-92b,

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2 Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine
Bao H, Kommadath A, Liang G, Sun X, Arantes AS, Tuggle CK, Bearson SM, Plastow GS, Stothard P, Guan le L
Sci Rep (2015) 5:12620
score: 20

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-125a, ssc-mir-146a, ssc-mir-148a, ssc-mir-155, ssc-mir-15a, ssc-mir-18a, ssc-mir-21, ssc-mir-214, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-30a, ssc-mir-30e, ssc-mir-331, ssc-mir-339-1, ssc-mir-339-2, ssc-mir-340-1, ssc-mir-340-2, ssc-mir-98, ssc-mir-99b,

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3 Joint Profiling of miRNAs and mRNAs Reveals miRNA Mediated Gene Regulation in the Göttingen Minipig Obesity Model
Mentzel CM, Alkan F, Keinicke H, Jacobsen MJ, Gorodkin J, Fredholm M, Cirera S
PLoS One (2016) 11:e0167285
score: 18

Other hairpins from this paper: hsa-mir-1-1, hsa-mir-1-2, hsa-mir-125a, hsa-mir-1285-1, hsa-mir-1285-2, hsa-mir-148a, hsa-mir-148b, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-17, hsa-mir-181d, hsa-mir-195, hsa-mir-196b, hsa-mir-199a-1, hsa-mir-199a-2, hsa-mir-204, hsa-mir-208b, hsa-mir-215, hsa-mir-30a, hsa-mir-30b, hsa-mir-30c-1, hsa-mir-30c-2, hsa-mir-30d, hsa-mir-30e, hsa-mir-34a, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, hsa-mir-92a-1, hsa-mir-92a-2, ssc-mir-1, ssc-mir-125a, ssc-mir-1285, ssc-mir-148a, ssc-mir-148b, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-17, ssc-mir-181d, ssc-mir-195, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-204, ssc-mir-208b, ssc-mir-215, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-34a, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-9-3, ssc-mir-92a-1, ssc-mir-92a-2,

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4 miR-146a-5p inhibits TNF-α-induced adipogenesis via targeting insulin receptor in primary porcine adipocytes
Wu D, Xi QY, Cheng X, Dong T, Zhu XT, Shu G, Wang LN, Jiang QY, Zhang YL
J Lipid Res (2016) 57:1360-1372
score: 11

Other hairpins from this paper: ssc-mir-103-1, ssc-mir-103-2, ssc-mir-122, ssc-mir-124a-1, ssc-mir-124a-2, ssc-mir-125a, ssc-mir-1307, ssc-mir-130a, ssc-mir-130b, ssc-mir-140, ssc-mir-144, ssc-mir-145, ssc-mir-146a, ssc-mir-146b, ssc-mir-148a, ssc-mir-148b, ssc-mir-155, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181c, ssc-mir-21, ssc-mir-214, ssc-mir-23b, ssc-mir-27a, ssc-mir-27b, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-320, ssc-mir-335, ssc-mir-33b, ssc-mir-365-1, ssc-mir-365-2, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-423, ssc-mir-664, ssc-mir-92a-1, ssc-mir-92a-2,

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5 Comparative Anterior Pituitary miRNA and mRNA Expression Profiles of Bama Minipigs and Landrace Pigs Reveal Potential Molecular Network Involved in Animal Postnatal Growth
Ye RS, Li M, Qi QE, Cheng X, Chen T, Li CY, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Xi QY, Zhang YL
PLoS One (2015) 10:e0131987
score: 9

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-10a, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-143, ssc-mir-148a, ssc-mir-149, ssc-mir-183, ssc-mir-187, ssc-mir-191, ssc-mir-193a, ssc-mir-195, ssc-mir-199b, ssc-mir-200b, ssc-mir-206, ssc-mir-21, ssc-mir-224, ssc-mir-23a, ssc-mir-23b, ssc-mir-26a, ssc-mir-26b, ssc-mir-29a, ssc-mir-29c, ssc-mir-30b, ssc-mir-326, ssc-mir-335, ssc-mir-365-1, ssc-mir-365-2, ssc-mir-375, ssc-mir-376a, ssc-mir-432, ssc-mir-4334, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-7139, ssc-mir-98,

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6 The regulation roles of miR-125b, miR-221 and miR-27b in porcine Salmonella infection signalling pathway
Yao M, Gao W, Yang J, Liang X, Luo J, Huang T
Biosci Rep (2016) 36
score: 8

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-128-1, ssc-mir-128-2, ssc-mir-142, ssc-mir-145, ssc-mir-146a, ssc-mir-146b, ssc-mir-155, ssc-mir-15a, ssc-mir-15b, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-221, ssc-mir-26a, ssc-mir-27b, ssc-mir-29a, ssc-mir-99a,

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7 Blood miRNomes and transcriptomes reveal novel longevity mechanisms in the long-lived bat, Myotis myotis
Huang Z, Jebb D, Teeling EC
BMC Genomics (2016) 17:906
score: 7

Other hairpins from this paper: bta-mir-101-1, bta-mir-101-2, bta-mir-125a, bta-mir-125b-1, bta-mir-125b-2, bta-mir-143, bta-mir-144, bta-mir-155, bta-mir-16a, bta-mir-16b, bta-mir-214, bta-mir-217, bta-mir-221, bta-mir-29a, bta-mir-29b-1, bta-mir-29b-2, bta-mir-29c, bta-mir-29d, bta-mir-29e, bta-mir-34a, bta-mir-34b, bta-mir-34c, bta-mir-93, hsa-mir-101-1, hsa-mir-101-2, hsa-mir-125a, hsa-mir-125b-1, hsa-mir-125b-2, hsa-mir-143, hsa-mir-144, hsa-mir-155, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-214, hsa-mir-217, hsa-mir-221, hsa-mir-29a, hsa-mir-29b-1, hsa-mir-29b-2, hsa-mir-29c, hsa-mir-34a, hsa-mir-34b, hsa-mir-34c, hsa-mir-93, mmu-mir-101a, mmu-mir-101b, mmu-mir-101c, mmu-mir-125a, mmu-mir-125b-1, mmu-mir-125b-2, mmu-mir-143, mmu-mir-144, mmu-mir-155, mmu-mir-16-1, mmu-mir-16-2, mmu-mir-214, mmu-mir-217, mmu-mir-221, mmu-mir-29a, mmu-mir-29b-1, mmu-mir-29b-2, mmu-mir-29c, mmu-mir-34a, mmu-mir-34b, mmu-mir-34c, mmu-mir-93, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-143, ssc-mir-144, ssc-mir-155, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-214, ssc-mir-217-1, ssc-mir-217-2, ssc-mir-221, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-34a, ssc-mir-34c-1, ssc-mir-34c-2,

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8 Characterization of the microRNAome in porcine reproductive and respiratory syndrome virus infected macrophages
A Hicks J, Yoo D, Liu HC
PLoS One (2013) 8:e82054
score: 7

Other hairpins from this paper: ssc-mir-124a-1, ssc-mir-124a-2, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-132, ssc-mir-136, ssc-mir-145, ssc-mir-146a, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-21, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-27b, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-30a, ssc-mir-30e, ssc-mir-500, ssc-mir-9-2, ssc-mir-98,

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9 MicroRNAome and expression profile of developing tooth germ in miniature pigs
Li A, Song T, Wang F, Liu D, Fan Z, Zhang C, He J, Wang S
PLoS One (2012) 7:e52256
score: 5

Other hairpins from this paper: ssc-let-7f-1, ssc-let-7f-2, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-128-1, ssc-mir-128-2, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-140, ssc-mir-141, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-199b, ssc-mir-200b, ssc-mir-205, ssc-mir-206, ssc-mir-214, ssc-mir-218-1, ssc-mir-218-2, ssc-mir-218b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-31, ssc-mir-429, ssc-mir-455,

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10 A MicroRNA-Transcription Factor Blueprint for Early Atrial Arrhythmogenic Remodeling
Torrado M, Franco D, Lozano-Velasco E, Hernández-Torres F, Calviño R, Aldama G, Centeno A, Castro-Beiras A, Mikhailov A
Biomed Res Int (2015) 2015:263151
score: 3

Other hairpins from this paper: ssc-mir-1, ssc-mir-10a, ssc-mir-10b, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-129b, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-141, ssc-mir-143, ssc-mir-17, ssc-mir-182, ssc-mir-18b, ssc-mir-21, ssc-mir-22, ssc-mir-23a, ssc-mir-23b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-27b, ssc-mir-296, ssc-mir-29a, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-363-1, ssc-mir-363-2, ssc-mir-4334, ssc-mir-4335, ssc-mir-4339, ssc-mir-486-1, ssc-mir-486-2, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-7140,

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11 Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins
Hong JS, Kim NH, Choi CY, Lee JS, Na D, Chun T, Lee YS
Vet Res (2015) 46:39
score: 3

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-106a, ssc-mir-1224, ssc-mir-125a, ssc-mir-132, ssc-mir-139, ssc-mir-144, ssc-mir-151, ssc-mir-185, ssc-mir-194b, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-202, ssc-mir-221, ssc-mir-361, ssc-mir-411, ssc-mir-432, ssc-mir-99a, ssc-mir-99b,

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12 miRNA expression profile analysis in kidney of different porcine breeds
Timoneda O, Balcells I, Núñez JI, Egea R, Vera G, Castelló A, Tomàs A, Sánchez A
PLoS One (2013) 8:e55402
score: 3

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-100, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-10a, ssc-mir-10b, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-140, ssc-mir-145, ssc-mir-1468, ssc-mir-151, ssc-mir-152, ssc-mir-192, ssc-mir-194a, ssc-mir-194b, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-200b, ssc-mir-21, ssc-mir-23a, ssc-mir-23b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-29c, ssc-mir-30d, ssc-mir-31, ssc-mir-324, ssc-mir-362, ssc-mir-374a, ssc-mir-374b, ssc-mir-423, ssc-mir-486-1, ssc-mir-486-2, ssc-mir-532, ssc-mir-551a, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-99a,

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13 Systems biology approach to the dissection of the complexity of regulatory networks in the S. scrofa cardiocirculatory system
Martini P, Sales G, Calura E, Brugiolo M, Lanfranchi G, Romualdi C, Cagnin S
Int J Mol Sci (2013) 14:23160-23187
score: 1

Other hairpins from this paper: ssc-mir-125a, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-138, ssc-mir-143, ssc-mir-23a, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-29c, ssc-mir-542, ssc-mir-99b,

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14 MiR-125b reduces porcine reproductive and respiratory syndrome virus replication by negatively regulating the NF-κB pathway
Wang D, Cao L, Xu Z, Fang L, Zhong Y, Chen Q, Luo R, Chen H, Li K, Xiao S
PLoS One (2013) 8:e55838
score: 1

Other hairpins from this paper: ssc-mir-122, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-146a, ssc-mir-150-1, ssc-mir-150-2, ssc-mir-155, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-199b, ssc-mir-210, ssc-mir-223, ssc-mir-23a, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-28, ssc-mir-296, ssc-mir-32, ssc-mir-323, ssc-mir-365-1, ssc-mir-365-2, ssc-mir-382, ssc-mir-491,

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