1 Comparative genomics of flowering time pathways using Brachypodium distachyon as a model for the temperate grasses
Higgins JA, Bailey PC, Laurie DA
PLoS One (2010) 5:e10065
score: 13

Other hairpins from this paper: ath-MIR156a, ath-MIR156b, ath-MIR156c, ath-MIR156d, ath-MIR156e, ath-MIR156f, ath-MIR156g, ath-MIR156h, ath-MIR156i, ath-MIR156j, ath-MIR172a, ath-MIR172b, ath-MIR172c, ath-MIR172d, ath-MIR172e, bdi-MIR156a, bdi-MIR156b, bdi-MIR156c, bdi-MIR156d, bdi-MIR156e, bdi-MIR156f, bdi-MIR156g, bdi-MIR156h, bdi-MIR156i, bdi-MIR156j, bdi-MIR172a, bdi-MIR172b, bdi-MIR172d, hvu-MIR156a, hvu-MIR156b, osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR156k, osa-MIR156l, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR172d, tae-MIR156,

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2 Deep sequencing of Brachypodium small RNAs at the global genome level identifies microRNAs involved in cold stress response
Zhang J, Xu Y, Huan Q, Chong K
BMC Genomics (2009) 10:449
score: 12

Other hairpins from this paper: bdi-MIR156a, bdi-MIR156b, bdi-MIR156c, bdi-MIR156d, bdi-MIR156e, bdi-MIR156f, bdi-MIR156g, bdi-MIR156h, bdi-MIR156i, bdi-MIR156j, bdi-MIR160a, bdi-MIR160b, bdi-MIR160c, bdi-MIR160d, bdi-MIR160e, bdi-MIR160f, bdi-MIR162, bdi-MIR164a, bdi-MIR164b, bdi-MIR164c, bdi-MIR164e, bdi-MIR164f, bdi-MIR166a, bdi-MIR166b, bdi-MIR166c, bdi-MIR166d, bdi-MIR166e, bdi-MIR166f, bdi-MIR166g, bdi-MIR166h, bdi-MIR166i, bdi-MIR166j, bdi-MIR167a, bdi-MIR167b, bdi-MIR167c, bdi-MIR167d, bdi-MIR167e, bdi-MIR167f, bdi-MIR167g, bdi-MIR168, bdi-MIR169a, bdi-MIR169b, bdi-MIR169c, bdi-MIR169d, bdi-MIR169e, bdi-MIR169f, bdi-MIR169g, bdi-MIR169h, bdi-MIR169i, bdi-MIR169j, bdi-MIR169k, bdi-MIR169l, bdi-MIR169m, bdi-MIR169n, bdi-MIR171a, bdi-MIR171b, bdi-MIR171c, bdi-MIR171d, bdi-MIR171e, bdi-MIR171f, bdi-MIR172a, bdi-MIR172b, bdi-MIR172d, bdi-MIR319a, bdi-MIR319b, bdi-MIR390a, bdi-MIR393a, bdi-MIR393b, bdi-MIR394, bdi-MIR395a, bdi-MIR395b, bdi-MIR395c, bdi-MIR395d, bdi-MIR395e, bdi-MIR395f, bdi-MIR395g, bdi-MIR395h, bdi-MIR395j, bdi-MIR395k, bdi-MIR395l, bdi-MIR395m, bdi-MIR395n, bdi-MIR395o, bdi-MIR395p, bdi-MIR395q, bdi-MIR396a, bdi-MIR396b, bdi-MIR396c, bdi-MIR396d, bdi-MIR396e, bdi-MIR397a, bdi-MIR397b, bdi-MIR398a, bdi-MIR398b, bdi-MIR528, bdi-MIR529, bdi-MIR827, osa-MIR156a, osa-MIR156b, osa-MIR156c, osa-MIR156d, osa-MIR156e, osa-MIR156f, osa-MIR156g, osa-MIR156h, osa-MIR156i, osa-MIR156j, osa-MIR156k, osa-MIR156l, osa-MIR160a, osa-MIR160b, osa-MIR160c, osa-MIR160d, osa-MIR160e, osa-MIR160f, osa-MIR162a, osa-MIR162b, osa-MIR164a, osa-MIR164b, osa-MIR164c, osa-MIR164d, osa-MIR164e, osa-MIR164f, osa-MIR166a, osa-MIR166b, osa-MIR166c, osa-MIR166d, osa-MIR166e, osa-MIR166f, osa-MIR166g, osa-MIR166h, osa-MIR166i, osa-MIR166j, osa-MIR166k, osa-MIR166l, osa-MIR166m, osa-MIR167a, osa-MIR167b, osa-MIR167c, osa-MIR167d, osa-MIR167e, osa-MIR167f, osa-MIR167g, osa-MIR167h, osa-MIR167i, osa-MIR167j, osa-MIR168a, osa-MIR168b, osa-MIR169a, osa-MIR169b, osa-MIR169c, osa-MIR169d, osa-MIR169e, osa-MIR169f, osa-MIR169g, osa-MIR169h, osa-MIR169i, osa-MIR169j, osa-MIR169k, osa-MIR169l, osa-MIR169m, osa-MIR169n, osa-MIR169o, osa-MIR169p, osa-MIR169q, osa-MIR169r, osa-MIR171a, osa-MIR171b, osa-MIR171c, osa-MIR171d, osa-MIR171e, osa-MIR171f, osa-MIR171g, osa-MIR171h, osa-MIR171i, osa-MIR172a, osa-MIR172b, osa-MIR172c, osa-MIR172d, osa-MIR319a, osa-MIR319b, osa-MIR390, osa-MIR393a, osa-MIR393b, osa-MIR394, osa-MIR395a, osa-MIR395b, osa-MIR395c, osa-MIR395d, osa-MIR395e, osa-MIR395f, osa-MIR395g, osa-MIR395h, osa-MIR395i, osa-MIR395j, osa-MIR395k, osa-MIR395l, osa-MIR395m, osa-MIR395n, osa-MIR395o, osa-MIR395p, osa-MIR395q, osa-MIR395r, osa-MIR395s, osa-MIR395t, osa-MIR395u, osa-MIR395v, osa-MIR395w, osa-MIR395x, osa-MIR395y, osa-MIR396a, osa-MIR396b, osa-MIR396c, osa-MIR396d, osa-MIR396e, osa-MIR396f, osa-MIR396g, osa-MIR396h, osa-MIR397a, osa-MIR397b, osa-MIR398a, osa-MIR398b, osa-MIR528, osa-MIR529a, osa-MIR529b, osa-MIR827,

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3 Regulation of FT splicing by an endogenous cue in temperate grasses
Qin Z, Wu J, Geng S, Feng N, Chen F, Kong X, Song G, Chen K, Li A, Mao L, Wu L
Nat Commun (2017) 8:14320
score: 8

Other hairpins from this paper: bdi-MIR156a, bdi-MIR156b, bdi-MIR156c, bdi-MIR156d, bdi-MIR156e, bdi-MIR156f, bdi-MIR156g, bdi-MIR156h, bdi-MIR156i, bdi-MIR156j, bdi-MIR172a, bdi-MIR172b, bdi-MIR172d, bdi-MIR5200a, bdi-MIR5200b, bdi-MIR5200c, hvu-MIR156a, hvu-MIR156b, tae-MIR156, tae-MIR5200,

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4 Parallel analysis of RNA ends enhances global investigation of microRNAs and target RNAs of Brachypodium distachyon
Jeong DH, Schmidt SA, Rymarquis LA, Park S, Ganssmann M, German MA, Accerbi M, Zhai J, Fahlgren N, Fox SE, Garvin DF, Mockler TC, Carrington JC, Meyers BC, Green PJ
Genome Biol (2013) 14:R145
score: 8

Other hairpins from this paper: bdi-MIR156a, bdi-MIR156b, bdi-MIR156c, bdi-MIR156d, bdi-MIR156e, bdi-MIR156f, bdi-MIR156g, bdi-MIR156h, bdi-MIR156i, bdi-MIR156j, bdi-MIR162, bdi-MIR164a, bdi-MIR166a, bdi-MIR166b, bdi-MIR166c, bdi-MIR166d, bdi-MIR166e, bdi-MIR166f, bdi-MIR166g, bdi-MIR166h, bdi-MIR166i, bdi-MIR166j, bdi-MIR168, bdi-MIR172a, bdi-MIR172b, bdi-MIR172d, bdi-MIR2118a, bdi-MIR2118b, bdi-MIR2275a, bdi-MIR2275b, bdi-MIR2275c, bdi-MIR390a, bdi-MIR398a, bdi-MIR398b, bdi-MIR399a, bdi-MIR399b, bdi-MIR399c, bdi-MIR399d, bdi-MIR444a, bdi-MIR444b, bdi-MIR444c, bdi-MIR444d, bdi-MIR5163b, bdi-MIR5200a, bdi-MIR5200b, bdi-MIR5200c, bdi-MIR529, bdi-MIR7738, bdi-MIR7754, bdi-MIR827, bdi-MIR9483a, bdi-MIR9483b, bdi-MIR9486a,

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5 The identification of new candidate genes Triticum aestivum FLOWERING LOCUS T3-B1 (TaFT3-B1) and TARGET OF EAT1 (TaTOE1-B1) controlling the short-day photoperiod response in bread wheat
Zikhali M, Wingen LU, Leverington-Waite M, Specel S, Griffiths S
Plant Cell Environ (2017) 40:2678-2690
score: 4

Other hairpins from this paper: ath-MIR172a, ath-MIR172b, ath-MIR172c, ath-MIR172d, ath-MIR172e, bdi-MIR172a, bdi-MIR172b, bdi-MIR172d, zma-MIR172a, zma-MIR172b, zma-MIR172c, zma-MIR172d, zma-MIR172e,

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6 A global profiling of uncapped mRNAs under cold stress reveals specific decay patterns and endonucleolytic cleavages in Brachypodium distachyon
Zhang J, Mao Z, Chong K
Genome Biol (2013) 14:R92
score: 3

Other hairpins from this paper: bdi-MIR169e, bdi-MIR172a, bdi-MIR172b, bdi-MIR172d, bdi-MIR393a, bdi-MIR393b, bdi-MIR396a, bdi-MIR396b, bdi-MIR396c, bdi-MIR396d, bdi-MIR396e, bdi-MIR397a, bdi-MIR397b, bdi-MIR528,

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