1 Identification of microRNAs in PCV2 subclinically infected pigs by high throughput sequencing
Núñez-Hernández F, Pérez LJ, Muñoz M, Vera G, Tomás A, Egea R, Córdoba S, Segalés J, Sánchez A, Núñez JI
Vet Res (2015) 46:18
score: 39

Other hairpins from this paper: ssc-let-7d, ssc-mir-126, ssc-mir-129a, ssc-mir-193a, ssc-mir-34a, ssc-mir-574,

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2 Cloning, characterization and expression analysis of porcine microRNAs
Reddy AM, Zheng Y, Jagadeeswaran G, Macmil SL, Graham WB, Roe BA, Desilva U, Zhang W, Sunkar R
BMC Genomics (2009) 10:65
score: 28

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-1-1, hsa-mir-1-2, hsa-mir-101-1, hsa-mir-101-2, hsa-mir-122, hsa-mir-126, hsa-mir-130a, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-133b, hsa-mir-142, hsa-mir-143, hsa-mir-15a, hsa-mir-15b, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-17, hsa-mir-181a-1, hsa-mir-181a-2, hsa-mir-181b-1, hsa-mir-181b-2, hsa-mir-181c, hsa-mir-181d, hsa-mir-18a, hsa-mir-18b, hsa-mir-194-1, hsa-mir-194-2, hsa-mir-19a, hsa-mir-19b-1, hsa-mir-208a, hsa-mir-208b, hsa-mir-20a, hsa-mir-20b, hsa-mir-22, hsa-mir-26a-1, hsa-mir-26a-2, hsa-mir-26b, hsa-mir-29c, hsa-mir-30c-1, hsa-mir-30c-2, hsa-mir-326, hsa-mir-378a, hsa-mir-378b, hsa-mir-378c, hsa-mir-378d-1, hsa-mir-378d-2, hsa-mir-378e, hsa-mir-378f, hsa-mir-378g, hsa-mir-378h, hsa-mir-378i, hsa-mir-378j, hsa-mir-423, hsa-mir-451a, hsa-mir-451b, hsa-mir-484, hsa-mir-499a, hsa-mir-499b, hsa-mir-98, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7d, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-let-7g, mmu-let-7i, mmu-let-7j, mmu-let-7k, mmu-mir-101a, mmu-mir-101b, mmu-mir-101c, mmu-mir-122, mmu-mir-126a, mmu-mir-126b, mmu-mir-130a, mmu-mir-133a-1, mmu-mir-133a-2, mmu-mir-133b, mmu-mir-133c, mmu-mir-142a, mmu-mir-142b, mmu-mir-143, mmu-mir-15a, mmu-mir-15b, mmu-mir-16-1, mmu-mir-16-2, mmu-mir-17, mmu-mir-181a-1, mmu-mir-181a-2, mmu-mir-181b-1, mmu-mir-181b-2, mmu-mir-181c, mmu-mir-181d, mmu-mir-18a, mmu-mir-18b, mmu-mir-194-1, mmu-mir-194-2, mmu-mir-19a, mmu-mir-19b-1, mmu-mir-1a-1, mmu-mir-1a-2, mmu-mir-1b, mmu-mir-208a, mmu-mir-208b, mmu-mir-20a, mmu-mir-20b, mmu-mir-22, mmu-mir-26a-1, mmu-mir-26a-2, mmu-mir-26b, mmu-mir-29c, mmu-mir-30c-1, mmu-mir-30c-2, mmu-mir-326, mmu-mir-378a, mmu-mir-378b, mmu-mir-378c, mmu-mir-378d, mmu-mir-423, mmu-mir-451a, mmu-mir-451b, mmu-mir-484, mmu-mir-499, mmu-mir-98, rno-let-7a-1, rno-let-7a-2, rno-let-7b, rno-let-7c-1, rno-let-7c-2, rno-let-7d, rno-let-7e, rno-let-7f-1, rno-let-7f-2, rno-let-7g, rno-let-7i, rno-mir-1, rno-mir-101a, rno-mir-101b, rno-mir-122, rno-mir-126a, rno-mir-126b, rno-mir-130a, rno-mir-133a, rno-mir-133b, rno-mir-133c, rno-mir-142, rno-mir-143, rno-mir-15a, rno-mir-15b, rno-mir-16, rno-mir-17-1, rno-mir-17-2, rno-mir-181a-1, rno-mir-181a-2, rno-mir-181b-1, rno-mir-181b-2, rno-mir-181c, rno-mir-181d, rno-mir-18a, rno-mir-194-1, rno-mir-194-2, rno-mir-19a, rno-mir-19b-1, rno-mir-1b, rno-mir-208a, rno-mir-208b, rno-mir-20a, rno-mir-20b, rno-mir-22, rno-mir-26a, rno-mir-26b, rno-mir-29c-1, rno-mir-29c-2, rno-mir-30c-1, rno-mir-30c-2, rno-mir-326, rno-mir-378a, rno-mir-378b, rno-mir-423, rno-mir-451, rno-mir-484, rno-mir-499, rno-mir-98, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-122, ssc-mir-126, ssc-mir-130a, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-142, ssc-mir-143, ssc-mir-15a, ssc-mir-15b, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-17, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-18a, ssc-mir-18b, ssc-mir-194a, ssc-mir-194b, ssc-mir-19a, ssc-mir-19b-1, ssc-mir-208b, ssc-mir-20a, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-22, ssc-mir-26a, ssc-mir-26b, ssc-mir-29c, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-326, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-423, ssc-mir-451, ssc-mir-484, ssc-mir-499, ssc-mir-98,

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3 MicroRNA let-7f-5p Inhibits Porcine Reproductive and Respiratory Syndrome Virus by Targeting MYH9
Li N, Du T, Yan Y, Zhang A, Gao J, Hou G, Xiao S, Zhou EM
Sci Rep (2016) 6:34332
score: 24

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-24-1, ssc-mir-24-2,

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4 Differentially expressed miRNAs after GnRH treatment and their potential roles in FSH regulation in porcine anterior pituitary cell
Ye RS, Xi QY, Qi Q, Cheng X, Chen T, Li H, Kallon S, Shu G, Wang SB, Jiang QY, Zhang YL
PLoS One (2013) 8:e57156
score: 21

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-105-2, ssc-mir-1307, ssc-mir-130b, ssc-mir-132, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-151, ssc-mir-152, ssc-mir-15a, ssc-mir-15b, ssc-mir-16-1, ssc-mir-181d, ssc-mir-183, ssc-mir-195, ssc-mir-19a, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-206, ssc-mir-21, ssc-mir-22, ssc-mir-30e, ssc-mir-320, ssc-mir-324, ssc-mir-325, ssc-mir-338, ssc-mir-340-1, ssc-mir-340-2, ssc-mir-361, ssc-mir-423, ssc-mir-425, ssc-mir-451, ssc-mir-532, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-708,

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5 Differential expression of micrornas in porcine parvovirus infected porcine cell line
Li X, Zhu L, Liu X, Sun X, Zhou Y, Lang Q, Li P, Cai Y, Qiao X, Xu Z
Virol J (2015) 12:128
score: 21

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-106a, ssc-mir-10a, ssc-mir-10b, ssc-mir-122, ssc-mir-126, ssc-mir-142, ssc-mir-146a, ssc-mir-146b, ssc-mir-150-1, ssc-mir-150-2, ssc-mir-152, ssc-mir-155, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-17, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-18a, ssc-mir-192, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-19a, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-20a, ssc-mir-21, ssc-mir-221, ssc-mir-223, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-326, ssc-mir-34a, ssc-mir-34c-1, ssc-mir-34c-2, ssc-mir-424, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-9-3, ssc-mir-92a-1, ssc-mir-92a-2,

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6 Comparative Anterior Pituitary miRNA and mRNA Expression Profiles of Bama Minipigs and Landrace Pigs Reveal Potential Molecular Network Involved in Animal Postnatal Growth
Ye RS, Li M, Qi QE, Cheng X, Chen T, Li CY, Wang SB, Shu G, Wang LN, Zhu XT, Jiang QY, Xi QY, Zhang YL
PLoS One (2015) 10:e0131987
score: 20

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-10a, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-143, ssc-mir-148a, ssc-mir-149, ssc-mir-183, ssc-mir-187, ssc-mir-191, ssc-mir-193a, ssc-mir-195, ssc-mir-199b, ssc-mir-200b, ssc-mir-206, ssc-mir-21, ssc-mir-224, ssc-mir-23a, ssc-mir-23b, ssc-mir-26a, ssc-mir-26b, ssc-mir-29a, ssc-mir-29c, ssc-mir-30b, ssc-mir-326, ssc-mir-335, ssc-mir-365-1, ssc-mir-365-2, ssc-mir-375, ssc-mir-376a, ssc-mir-432, ssc-mir-4334, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-7139, ssc-mir-98,

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7 Genetic architecture and regulatory impact on hepatic microRNA expression linked to immune and metabolic traits
Ponsuksili S, Trakooljul N, Hadlich F, Haack F, Murani E, Wimmers K
Open Biol (2017) 7
score: 20

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-10a, ssc-mir-10b, ssc-mir-1224, ssc-mir-130b, ssc-mir-138, ssc-mir-140, ssc-mir-143, ssc-mir-145, ssc-mir-148a, ssc-mir-148b, ssc-mir-152, ssc-mir-155, ssc-mir-15a, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-18a, ssc-mir-18b, ssc-mir-194a, ssc-mir-194b, ssc-mir-195, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-199b, ssc-mir-19a, ssc-mir-204, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-214, ssc-mir-23a, ssc-mir-23b, ssc-mir-29a, ssc-mir-30e, ssc-mir-34a, ssc-mir-363-1, ssc-mir-363-2, ssc-mir-4334, ssc-mir-497, ssc-mir-652, ssc-mir-671, ssc-mir-708, ssc-mir-744, ssc-mir-98, ssc-mir-99a,

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8 Integrative analysis of porcine microRNAome during skeletal muscle development
Qin L, Chen Y, Liu X, Ye S, Yu K, Huang Z, Yu J, Zhou X, Chen H, Mo D
PLoS One (2013) 8:e72418
score: 18

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-1-1, hsa-mir-1-2, hsa-mir-103a-1, hsa-mir-103a-2, hsa-mir-103b-1, hsa-mir-103b-2, hsa-mir-10a, hsa-mir-125b-1, hsa-mir-125b-2, hsa-mir-126, hsa-mir-127, hsa-mir-128-1, hsa-mir-128-2, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-133b, hsa-mir-143, hsa-mir-148a, hsa-mir-148b, hsa-mir-17, hsa-mir-181a-1, hsa-mir-181a-2, hsa-mir-181c, hsa-mir-199a-1, hsa-mir-199a-2, hsa-mir-206, hsa-mir-208a, hsa-mir-208b, hsa-mir-214, hsa-mir-221, hsa-mir-23a, hsa-mir-23b, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-26a-1, hsa-mir-26a-2, hsa-mir-27a, hsa-mir-27b, hsa-mir-29a, hsa-mir-29b-1, hsa-mir-29b-2, hsa-mir-29c, hsa-mir-378a, hsa-mir-378b, hsa-mir-378c, hsa-mir-378d-1, hsa-mir-378d-2, hsa-mir-378e, hsa-mir-378f, hsa-mir-378g, hsa-mir-378h, hsa-mir-378i, hsa-mir-378j, hsa-mir-411, hsa-mir-424, hsa-mir-486-1, hsa-mir-486-2, hsa-mir-499a, hsa-mir-499b, hsa-mir-503, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-10a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-127, ssc-mir-128-1, ssc-mir-128-2, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-143, ssc-mir-148a, ssc-mir-148b, ssc-mir-17, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181c, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-206, ssc-mir-208b, ssc-mir-214, ssc-mir-221, ssc-mir-23a, ssc-mir-23b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-27a, ssc-mir-27b, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-411, ssc-mir-424, ssc-mir-486-1, ssc-mir-486-2, ssc-mir-499, ssc-mir-503,

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9 Distinct MicroRNA Expression Signatures of Porcine Induced Pluripotent Stem Cells under Mouse and Human ESC Culture Conditions
Zhang W, Zhong L, Wang J, Han J
PLoS One (2016) 11:e0158655
score: 16

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-106a, hsa-mir-10b, hsa-mir-127, hsa-mir-128-1, hsa-mir-128-2, hsa-mir-136, hsa-mir-139, hsa-mir-142, hsa-mir-143, hsa-mir-145, hsa-mir-146b, hsa-mir-17, hsa-mir-182, hsa-mir-183, hsa-mir-187, hsa-mir-18a, hsa-mir-18b, hsa-mir-193a, hsa-mir-195, hsa-mir-19b-1, hsa-mir-19b-2, hsa-mir-200a, hsa-mir-200b, hsa-mir-200c, hsa-mir-206, hsa-mir-20b, hsa-mir-21, hsa-mir-210, hsa-mir-216a, hsa-mir-216b, hsa-mir-217, hsa-mir-219a-1, hsa-mir-219a-2, hsa-mir-219b, hsa-mir-221, hsa-mir-222, hsa-mir-224, hsa-mir-23a, hsa-mir-23b, hsa-mir-302a, hsa-mir-302b, hsa-mir-302c, hsa-mir-302d, hsa-mir-302e, hsa-mir-302f, hsa-mir-31, hsa-mir-363, hsa-mir-371a, hsa-mir-371b, hsa-mir-452, hsa-mir-493, hsa-mir-495, hsa-mir-497, hsa-mir-505, hsa-mir-671, hsa-mir-708, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-92b, hsa-mir-935, hsa-mir-96, hsa-mir-98, hsa-mir-99a, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7d, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-let-7g, mmu-let-7i, mmu-let-7j, mmu-let-7k, mmu-mir-106a, mmu-mir-10b, mmu-mir-127, mmu-mir-128-1, mmu-mir-128-2, mmu-mir-136, mmu-mir-139, mmu-mir-142a, mmu-mir-142b, mmu-mir-143, mmu-mir-145a, mmu-mir-145b, mmu-mir-146b, mmu-mir-17, mmu-mir-182, mmu-mir-183, mmu-mir-1839, mmu-mir-187, mmu-mir-18a, mmu-mir-18b, mmu-mir-193a, mmu-mir-195a, mmu-mir-195b, mmu-mir-19b-1, mmu-mir-19b-2, mmu-mir-200a, mmu-mir-200b, mmu-mir-200c, mmu-mir-206, mmu-mir-20b, mmu-mir-210, mmu-mir-216a, mmu-mir-216b, mmu-mir-216c, mmu-mir-217, mmu-mir-219a-1, mmu-mir-219a-2, mmu-mir-219b, mmu-mir-21a, mmu-mir-21b, mmu-mir-21c, mmu-mir-221, mmu-mir-222, mmu-mir-224, mmu-mir-23a, mmu-mir-23b, mmu-mir-302a, mmu-mir-302b, mmu-mir-302c, mmu-mir-302d, mmu-mir-31, mmu-mir-363, mmu-mir-452, mmu-mir-493, mmu-mir-495, mmu-mir-497a, mmu-mir-497b, mmu-mir-505, mmu-mir-671, mmu-mir-708, mmu-mir-92a-1, mmu-mir-92a-2, mmu-mir-92b, mmu-mir-935, mmu-mir-96, mmu-mir-98, mmu-mir-99a, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-106a, ssc-mir-10b, ssc-mir-127, ssc-mir-128-1, ssc-mir-128-2, ssc-mir-136, ssc-mir-139, ssc-mir-142, ssc-mir-143, ssc-mir-145, ssc-mir-146b, ssc-mir-17, ssc-mir-182, ssc-mir-183, ssc-mir-1839, ssc-mir-187, ssc-mir-18a, ssc-mir-18b, ssc-mir-193a, ssc-mir-195, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-200b, ssc-mir-206, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-21, ssc-mir-210, ssc-mir-216-1, ssc-mir-216-2, ssc-mir-217-1, ssc-mir-217-2, ssc-mir-218b, ssc-mir-219a, ssc-mir-219b, ssc-mir-221, ssc-mir-222, ssc-mir-224, ssc-mir-23a, ssc-mir-23b, ssc-mir-31, ssc-mir-363-1, ssc-mir-363-2, ssc-mir-371, ssc-mir-452, ssc-mir-493, ssc-mir-497, ssc-mir-505, ssc-mir-671, ssc-mir-708, ssc-mir-7138, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-92b, ssc-mir-935, ssc-mir-96, ssc-mir-98, ssc-mir-9843, ssc-mir-99a,

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10 Discovery of porcine microRNAs in multiple tissues by a Solexa deep sequencing approach
Xie SS, Li XY, Liu T, Cao JH, Zhong Q, Zhao SH
PLoS One (2011) 6:e16235
score: 15

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-106a, ssc-mir-122, ssc-mir-133b, ssc-mir-140, ssc-mir-143, ssc-mir-145, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-191, ssc-mir-192, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-20a, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-223, ssc-mir-26a, ssc-mir-28, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-320, ssc-mir-375, ssc-mir-423, ssc-mir-505, ssc-mir-676-1, ssc-mir-676-2, ssc-mir-708, ssc-mir-98,

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11 Integrated analysis of miRNA and mRNA paired expression profiling of prenatal skeletal muscle development in three genotype pigs
Tang Z, Yang Y, Wang Z, Zhao S, Mu Y, Li K
Sci Rep (2015) 5:15544
score: 14

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-136, ssc-mir-202, ssc-mir-206, ssc-mir-214, ssc-mir-320, ssc-mir-325, ssc-mir-328, ssc-mir-370, ssc-mir-376c, ssc-mir-382, ssc-mir-487b, ssc-mir-500,

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12 Fishing Into the MicroRNA Transcriptome
Herkenhoff ME, Oliveira AC, Nachtigall PG, Costa JM, Campos VF, Hilsdorf AWS, Pinhal D
Front Genet (2018) 9:88
score: 12

Other hairpins from this paper: bta-let-7a-1, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7d, bta-let-7e, bta-let-7f-1, bta-let-7f-2, bta-let-7g, bta-let-7i, bta-mir-1-1, bta-mir-1-2, bta-mir-103-1, bta-mir-103-2, bta-mir-107, bta-mir-10a, bta-mir-10b, bta-mir-122, bta-mir-125b-1, bta-mir-125b-2, bta-mir-126, bta-mir-127, bta-mir-129-1, bta-mir-129-2, bta-mir-132, bta-mir-133a-1, bta-mir-133a-2, bta-mir-133b, bta-mir-133c, bta-mir-135b, bta-mir-138-1, bta-mir-138-2, bta-mir-142, bta-mir-143, bta-mir-144, bta-mir-146a, bta-mir-146b, bta-mir-17, bta-mir-181a-1, bta-mir-181a-2, bta-mir-181b-1, bta-mir-181b-2, bta-mir-181c, bta-mir-181d, bta-mir-190a, bta-mir-192, bta-mir-199a-1, bta-mir-199a-2, bta-mir-199b, bta-mir-199c, bta-mir-200a, bta-mir-200b, bta-mir-200c, bta-mir-202, bta-mir-206, bta-mir-20a, bta-mir-21, bta-mir-211, bta-mir-212, bta-mir-214, bta-mir-223, bta-mir-23a, bta-mir-25, bta-mir-26a-1, bta-mir-26a-2, bta-mir-26b, bta-mir-26c, bta-mir-29a, bta-mir-29b-1, bta-mir-29b-2, bta-mir-29c, bta-mir-29d, bta-mir-29e, bta-mir-30a, bta-mir-30b, bta-mir-30c, bta-mir-30d, bta-mir-30e, bta-mir-30f, bta-mir-338, bta-mir-33a, bta-mir-33b, bta-mir-375, bta-mir-429, bta-mir-451, bta-mir-455, bta-mir-499, bta-mir-92a-1, bta-mir-92a-2, bta-mir-92b, bta-mir-99a, bta-mir-99b, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-107, ssc-mir-10a, ssc-mir-10b, ssc-mir-122, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-127, ssc-mir-129a, ssc-mir-129b, ssc-mir-132, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-138, ssc-mir-142, ssc-mir-143, ssc-mir-144, ssc-mir-146a, ssc-mir-146b, ssc-mir-17, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-190a, ssc-mir-192, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-199b, ssc-mir-200b, ssc-mir-202, ssc-mir-206, ssc-mir-20a, ssc-mir-21, ssc-mir-212, ssc-mir-214, ssc-mir-223, ssc-mir-23a, ssc-mir-26a, ssc-mir-26b, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-338, ssc-mir-33b, ssc-mir-375, ssc-mir-429, ssc-mir-451, ssc-mir-455, ssc-mir-499, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-92b, ssc-mir-99a, ssc-mir-99b,

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13 MicroRNAome of porcine pre- and postnatal development
Li M, Xia Y, Gu Y, Zhang K, Lang Q, Chen L, Guan J, Luo Z, Chen H, Li Y, Li Q, Li X, Jiang AA, Shuai S, Wang J, Zhu Q, Zhou X, Gao X, Li X
PLoS One (2010) 5:e11541
score: 11

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-103a-1, hsa-mir-103a-2, hsa-mir-103b-1, hsa-mir-103b-2, hsa-mir-107, hsa-mir-122, hsa-mir-140, hsa-mir-15b, hsa-mir-17, hsa-mir-18a, hsa-mir-18b, hsa-mir-19a, hsa-mir-20a, hsa-mir-20b, hsa-mir-28, hsa-mir-301a, hsa-mir-301b, hsa-mir-9-1, hsa-mir-9-2, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-107, ssc-mir-122, ssc-mir-140, ssc-mir-15b, ssc-mir-17, ssc-mir-18a, ssc-mir-18b, ssc-mir-19a, ssc-mir-20a, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-28, ssc-mir-301, ssc-mir-9-1, ssc-mir-9-2,

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14 The regulation roles of miR-125b, miR-221 and miR-27b in porcine Salmonella infection signalling pathway
Yao M, Gao W, Yang J, Liang X, Luo J, Huang T
Biosci Rep (2016) 36
score: 11

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-128-1, ssc-mir-128-2, ssc-mir-142, ssc-mir-145, ssc-mir-146a, ssc-mir-146b, ssc-mir-155, ssc-mir-15a, ssc-mir-15b, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-221, ssc-mir-26a, ssc-mir-27b, ssc-mir-29a, ssc-mir-99a,

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15 MicroRNA expression profiles differ between primary myofiber of lean and obese pig breeds
He D, Zou T, Gai X, Ma J, Li M, Huang Z, Chen D
PLoS One (2017) 12:e0181897
score: 10

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-10a, ssc-mir-10b, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-127, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-148a, ssc-mir-17, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-206, ssc-mir-20a, ssc-mir-21, ssc-mir-214, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-99b,

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16 A comprehensive microRNA expression profile of the backfat tissue from castrated and intact full-sib pair male pigs
Bai Y, Huang JM, Liu G, Zhang JB, Wang JY, Liu CK, Fang MY
BMC Genomics (2014) 15:47
score: 10

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-10a, ssc-mir-129a, ssc-mir-129b, ssc-mir-130a, ssc-mir-142, ssc-mir-143, ssc-mir-145, ssc-mir-150-1, ssc-mir-150-2, ssc-mir-152, ssc-mir-17, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-185, ssc-mir-18a, ssc-mir-191, ssc-mir-193a, ssc-mir-194a, ssc-mir-195, ssc-mir-199b, ssc-mir-19a, ssc-mir-19b-1, ssc-mir-204, ssc-mir-205, ssc-mir-20a, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-21, ssc-mir-23a, ssc-mir-23b, ssc-mir-27a, ssc-mir-27b, ssc-mir-30a, ssc-mir-30e, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-423, ssc-mir-7134, ssc-mir-7142, ssc-mir-92a-1,

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17 Expression Profiles and Biological Roles of miR-196a in Swine
Ning X, Liu S, Qiu Y, Li G, Li Y, Li M, Yang G
Genes (Basel) (2016) 7
score: 9

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-130a, ssc-mir-130b, ssc-mir-143, ssc-mir-17, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-27b,

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18 Apoptosis in Porcine Pluripotent Cells: From ICM to iPSCs
Kim E, Hyun SH
Int J Mol Sci (2016) 17
score: 7

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-106a, hsa-mir-125b-1, hsa-mir-125b-2, hsa-mir-17, hsa-mir-20a, hsa-mir-20b, hsa-mir-302a, hsa-mir-302b, hsa-mir-302c, hsa-mir-302d, hsa-mir-302e, hsa-mir-302f, hsa-mir-92a-1, hsa-mir-92a-2, hsa-mir-92b, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-106a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-17, ssc-mir-20a, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-92b,

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19 MicroRNA transcriptome analysis of porcine vital organ responses to immunosuppressive porcine cytomegalovirus infection
Liu X, Wei H, Liao S, Ye J, Zhu L, Xu Z
Virol J (2018) 15:16
score: 7

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-106a, ssc-mir-10a, ssc-mir-10b, ssc-mir-126, ssc-mir-143, ssc-mir-146b, ssc-mir-148a, ssc-mir-155, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-192, ssc-mir-195, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-21, ssc-mir-214, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-27b, ssc-mir-301, ssc-mir-30a, ssc-mir-421, ssc-mir-425, ssc-mir-486-1, ssc-mir-486-2,

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20 miRNA expression profile analysis in kidney of different porcine breeds
Timoneda O, Balcells I, Núñez JI, Egea R, Vera G, Castelló A, Tomàs A, Sánchez A
PLoS One (2013) 8:e55402
score: 6

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-100, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-10a, ssc-mir-10b, ssc-mir-125a, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-140, ssc-mir-145, ssc-mir-1468, ssc-mir-151, ssc-mir-152, ssc-mir-192, ssc-mir-194a, ssc-mir-194b, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-200b, ssc-mir-21, ssc-mir-23a, ssc-mir-23b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-29c, ssc-mir-30d, ssc-mir-31, ssc-mir-324, ssc-mir-362, ssc-mir-374a, ssc-mir-374b, ssc-mir-423, ssc-mir-486-1, ssc-mir-486-2, ssc-mir-532, ssc-mir-551a, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-99a,

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21 Identification and Analysis of Novel Viral and Host Dysregulated MicroRNAs in Variant Pseudorabies Virus-Infected PK15 Cells
Liu F, Zheng H, Tong W, Li GX, Tian Q, Liang C, Li LW, Zheng XC, Tong GZ
PLoS One (2016) 11:e0151546
score: 6

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-10a, ssc-mir-132, ssc-mir-146a, ssc-mir-146b, ssc-mir-148a, ssc-mir-148b, ssc-mir-15a, ssc-mir-15b, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-17, ssc-mir-18a, ssc-mir-18b, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-21, ssc-mir-210, ssc-mir-215, ssc-mir-219a, ssc-mir-22, ssc-mir-23a, ssc-mir-23b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-27a, ssc-mir-331, ssc-mir-371, ssc-mir-374b, ssc-mir-432, ssc-mir-532,

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22 Co-expression of host and viral microRNAs in porcine dendritic cells infected by the pseudorabies virus
Anselmo A, Flori L, Jaffrezic F, Rutigliano T, Cecere M, Cortes-Perez N, Lefèvre F, Rogel-Gaillard C, Giuffra E
PLoS One (2011) 6:e17374
score: 5

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-184, ssc-mir-192, ssc-mir-194a, ssc-mir-194b, ssc-mir-21, ssc-mir-215, ssc-mir-27b, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-30e, ssc-mir-339-1, ssc-mir-339-2, ssc-mir-370, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-708,

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23 Changes in cellular microRNA expression induced by porcine circovirus type 2-encoded proteins
Hong JS, Kim NH, Choi CY, Lee JS, Na D, Chun T, Lee YS
Vet Res (2015) 46:39
score: 5

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-106a, ssc-mir-1224, ssc-mir-125a, ssc-mir-132, ssc-mir-139, ssc-mir-144, ssc-mir-151, ssc-mir-185, ssc-mir-194b, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-202, ssc-mir-221, ssc-mir-361, ssc-mir-411, ssc-mir-432, ssc-mir-99a, ssc-mir-99b,

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24 A comprehensive expression profile of microRNAs in porcine pituitary
Li H, Xi Q, Xiong Y, Cheng X, Qi Q, Yang L, Shu G, Wang S, Wang L, Gao P, Zhu X, Jiang Q, Zhang Y, Yuan L
PLoS One (2011) 6:e24883
score: 5

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-122, ssc-mir-124a-1, ssc-mir-124a-2, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-1296, ssc-mir-135-1, ssc-mir-135-2, ssc-mir-137, ssc-mir-139, ssc-mir-141, ssc-mir-145, ssc-mir-152, ssc-mir-15a, ssc-mir-15b, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-183, ssc-mir-191, ssc-mir-204, ssc-mir-20a, ssc-mir-21, ssc-mir-210, ssc-mir-212, ssc-mir-222, ssc-mir-2366-1, ssc-mir-2366-2, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-26b, ssc-mir-27a, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-3613, ssc-mir-362, ssc-mir-375, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-99b,

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25 Altered microRNA profiles during early colon adenoma progression in a porcine model of familial adenomatous polyposis
Stachowiak M, Flisikowska T, Bauersachs S, Perleberg C, Pausch H, Switonski M, Kind A, Saur D, Schnieke A, Flisikowski K
Oncotarget (2017) 8:96154-96160
score: 5

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-126, hsa-mir-135a-1, hsa-mir-135a-2, hsa-mir-135b, hsa-mir-146a, hsa-mir-146b, hsa-mir-155, hsa-mir-181b-1, hsa-mir-181b-2, hsa-mir-183, hsa-mir-191, hsa-mir-196a-1, hsa-mir-196a-2, hsa-mir-7-1, hsa-mir-7-2, hsa-mir-7-3, hsa-mir-98, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-126, ssc-mir-146a, ssc-mir-146b, ssc-mir-155, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-183, ssc-mir-191, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-98,

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26 Identification and characterization of long non-coding RNAs in subcutaneous adipose tissue from castrated and intact full-sib pair Huainan male pigs
Wang J, Hua L, Chen J, Zhang J, Bai X, Gao B, Li C, Shi Z, Sheng W, Gao Y, Xing B
BMC Genomics (2017) 18:542
score: 4

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-103a-1, hsa-mir-103a-2, hsa-mir-103b-1, hsa-mir-103b-2, hsa-mir-107, hsa-mir-125b-1, hsa-mir-125b-2, hsa-mir-150, hsa-mir-15a, hsa-mir-17, hsa-mir-204, hsa-mir-21, hsa-mir-210, hsa-mir-221, hsa-mir-222, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-27a, hsa-mir-27b, hsa-mir-30a, hsa-mir-30b, hsa-mir-30c-1, hsa-mir-30c-2, hsa-mir-30d, hsa-mir-30e, hsa-mir-326, hsa-mir-378a, hsa-mir-378b, hsa-mir-378c, hsa-mir-378d-1, hsa-mir-378d-2, hsa-mir-378e, hsa-mir-378f, hsa-mir-378g, hsa-mir-378h, hsa-mir-378i, hsa-mir-378j, hsa-mir-9-1, hsa-mir-9-2, hsa-mir-9-3, mmu-let-7a-1, mmu-let-7a-2, mmu-let-7b, mmu-let-7c-1, mmu-let-7c-2, mmu-let-7d, mmu-let-7e, mmu-let-7f-1, mmu-let-7f-2, mmu-let-7g, mmu-let-7i, mmu-let-7j, mmu-let-7k, mmu-mir-103-1, mmu-mir-103-2, mmu-mir-107, mmu-mir-125b-1, mmu-mir-125b-2, mmu-mir-150, mmu-mir-15a, mmu-mir-17, mmu-mir-204, mmu-mir-210, mmu-mir-21a, mmu-mir-21b, mmu-mir-21c, mmu-mir-221, mmu-mir-222, mmu-mir-24-1, mmu-mir-24-2, mmu-mir-27a, mmu-mir-27b, mmu-mir-30a, mmu-mir-30b, mmu-mir-30c-1, mmu-mir-30c-2, mmu-mir-30d, mmu-mir-30e, mmu-mir-30f, mmu-mir-326, mmu-mir-378a, mmu-mir-378b, mmu-mir-378c, mmu-mir-378d, mmu-mir-9-1, mmu-mir-9-2, mmu-mir-9-3, mmu-mir-9b-1, mmu-mir-9b-2, mmu-mir-9b-3, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-107, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-150-1, ssc-mir-150-2, ssc-mir-15a, ssc-mir-17, ssc-mir-204, ssc-mir-21, ssc-mir-210, ssc-mir-221, ssc-mir-222, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-27a, ssc-mir-27b, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-326, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-9-3,

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27 Deciphering the porcine intestinal microRNA transcriptome
Sharbati S, Friedländer MR, Sharbati J, Hoeke L, Chen W, Keller A, Stähler PF, Rajewsky N, Einspanier R
BMC Genomics (2010) 11:275
score: 4

Other hairpins from this paper: hsa-let-7d, hsa-mir-125b-1, hsa-mir-125b-2, hsa-mir-126, hsa-mir-130a, hsa-mir-145, hsa-mir-155, hsa-mir-16-1, hsa-mir-16-2, hsa-mir-192, hsa-mir-194-1, hsa-mir-194-2, hsa-mir-19a, hsa-mir-19b-1, hsa-mir-19b-2, hsa-mir-21, hsa-mir-214, hsa-mir-215, hsa-mir-22, hsa-mir-23a, hsa-mir-23b, hsa-mir-23c, hsa-mir-24-1, hsa-mir-24-2, hsa-mir-26a-1, hsa-mir-26a-2, hsa-mir-27a, hsa-mir-30a, hsa-mir-30b, hsa-mir-374a, hsa-mir-374b, hsa-mir-421, hsa-mir-488, ssc-let-7d, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-126, ssc-mir-130a, ssc-mir-145, ssc-mir-155, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-192, ssc-mir-194a, ssc-mir-194b, ssc-mir-19a, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-21, ssc-mir-214, ssc-mir-215, ssc-mir-22, ssc-mir-23a, ssc-mir-23b, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-27a, ssc-mir-30a, ssc-mir-30b, ssc-mir-374a, ssc-mir-374b, ssc-mir-421, ssc-mir-4331-1, ssc-mir-4331-2,

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28 The role of viral and host microRNAs in the Aujeszky's disease virus during the infection process
Timoneda O, Núñez-Hernández F, Balcells I, Muñoz M, Castelló A, Vera G, Pérez LJ, Egea R, Mir G, Córdoba S, Rosell R, Segalés J, Tomàs A, Sánchez A, Núñez JI
PLoS One (2014) 9:e86965
score: 4

Other hairpins from this paper: ssc-let-7d, ssc-let-7i, ssc-mir-100, ssc-mir-106a, ssc-mir-10a, ssc-mir-1249-1, ssc-mir-1249-2, ssc-mir-125b-1, ssc-mir-125b-2, ssc-mir-129a, ssc-mir-1306, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-137, ssc-mir-17, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-206, ssc-mir-21, ssc-mir-218b, ssc-mir-23a, ssc-mir-26a, ssc-mir-26b, ssc-mir-29b-2, ssc-mir-30a, ssc-mir-30d, ssc-mir-339-1, ssc-mir-339-2, ssc-mir-345-1, ssc-mir-345-2, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-450b, ssc-mir-450c, ssc-mir-505, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-9-3, ssc-mir-92a-1, ssc-mir-92a-2, ssc-mir-92b, ssc-mir-99a, ssc-mir-99b,

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29 Microarray-based approach identifies differentially expressed microRNAs in porcine sexually immature and mature testes
Luo L, Ye L, Liu G, Shao G, Zheng R, Ren Z, Zuo B, Xu D, Lei M, Jiang S, Deng C, Xiong Y, Li F
PLoS One (2010) 5:e11744
score: 3

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-143, ssc-mir-145, ssc-mir-149, ssc-mir-155, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181d, ssc-mir-202, ssc-mir-206, ssc-mir-21, ssc-mir-214, ssc-mir-34c-1, ssc-mir-34c-2, ssc-mir-542,

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30 MicroRNA expression profiling of lactating mammary gland in divergent phenotype swine breeds
Peng J, Zhao JS, Shen YF, Mao HG, Xu NY
Int J Mol Sci (2015) 16:1448-1465
score: 3

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-126, ssc-mir-148a, ssc-mir-148b, ssc-mir-151, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-206, ssc-mir-21, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-26a, ssc-mir-26b, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-423, ssc-mir-542, ssc-mir-92a-1, ssc-mir-92a-2,

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31 Discovery of MicroRNAs associated with myogenesis by deep sequencing of serial developmental skeletal muscles in pigs
Hou X, Tang Z, Liu H, Wang N, Ju H, Li K
PLoS One (2012) 7:e52123
score: 3

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-10b, ssc-mir-127, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-143, ssc-mir-148a, ssc-mir-155, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-206, ssc-mir-208b, ssc-mir-221, ssc-mir-222, ssc-mir-2366-1, ssc-mir-2366-2, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-2411, ssc-mir-2483, ssc-mir-27b, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-3613, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-499, ssc-mir-574,

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32 The porcine microRNA transcriptome response to transmissible gastroenteritis virus infection
Liu X, Zhu L, Liao S, Xu Z, Zhou Y
PLoS One (2015) 10:e0120377
score: 3

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-124a-1, ssc-mir-124a-2, ssc-mir-126, ssc-mir-1306, ssc-mir-140, ssc-mir-142, ssc-mir-146a, ssc-mir-146b, ssc-mir-155, ssc-mir-195, ssc-mir-19a, ssc-mir-21, ssc-mir-2411, ssc-mir-28, ssc-mir-30b, ssc-mir-9-1, ssc-mir-9-2, ssc-mir-9-3, ssc-mir-92a-1, ssc-mir-92a-2,

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33 Computational prediction of disease microRNAs in domestic animals
Buza T, Arick M 2nd, Wang H, Peterson DG
BMC Res Notes (2014) 7:403
score: 2

Other hairpins from this paper: bta-let-7a-1, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7d, bta-let-7e, bta-let-7f-1, bta-let-7f-2, bta-let-7g, bta-let-7i, bta-mir-143, bta-mir-154a, bta-mir-154b, bta-mir-154c, bta-mir-21, bta-mir-26a-1, bta-mir-26a-2, bta-mir-26b, bta-mir-26c, bta-mir-377, bta-mir-494, eca-let-7a, eca-let-7a-2, eca-let-7c, eca-let-7d, eca-let-7e, eca-let-7f, eca-let-7g, eca-mir-143, eca-mir-154a, eca-mir-154b, eca-mir-21, eca-mir-26a, eca-mir-26a-2, eca-mir-377, eca-mir-494, gga-let-7a-1, gga-let-7a-2, gga-let-7a-3, gga-let-7b, gga-let-7c, gga-let-7d, gga-let-7f, gga-let-7g, gga-let-7i, gga-let-7j, gga-let-7k, gga-let-7l-1, gga-let-7l-2, gga-mir-143, gga-mir-21, gga-mir-26a, gga-mir-26a-2, hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-143, hsa-mir-154, hsa-mir-21, hsa-mir-26a-1, hsa-mir-26a-2, hsa-mir-26b, hsa-mir-377, hsa-mir-494, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-143, ssc-mir-21, ssc-mir-26a, ssc-mir-26b, ssc-mir-494,

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34 MicroRNA transcriptome profiles during swine skeletal muscle development
McDaneld TG, Smith TP, Doumit ME, Miles JR, Coutinho LL, Sonstegard TS, Matukumalli LK, Nonneman DJ, Wiedmann RT
BMC Genomics (2009) 10:77
score: 2

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-106a, ssc-mir-126, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-151, ssc-mir-15a, ssc-mir-15b, ssc-mir-16-1, ssc-mir-16-2, ssc-mir-18a, ssc-mir-18b, ssc-mir-206, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-27a, ssc-mir-27b, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-338, ssc-mir-34a, ssc-mir-34c-1, ssc-mir-34c-2, ssc-mir-376a, ssc-mir-376b, ssc-mir-376c, ssc-mir-381, ssc-mir-423, ssc-mir-424, ssc-mir-432,

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35 Characterization of Sus scrofa small non-coding RNAs present in both female and male gonads
Kowalczykiewicz D, Świercz A, Handschuh L, Leśniak K, Figlerowicz M, Wrzesinski J
PLoS One (2014) 9:e113249
score: 1

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-106a, ssc-mir-107, ssc-mir-10b, ssc-mir-122, ssc-mir-145, ssc-mir-17, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-184, ssc-mir-18a, ssc-mir-19a, ssc-mir-222, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2,

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36 Solexa sequencing identification of conserved and novel microRNAs in backfat of Large White and Chinese Meishan pigs
Chen C, Deng B, Qiao M, Zheng R, Chai J, Ding Y, Peng J, Jiang S
PLoS One (2012) 7:e31426
score: 1

Other hairpins from this paper: bta-let-7a-1, bta-let-7a-2, bta-let-7a-3, bta-let-7b, bta-let-7c, bta-let-7d, bta-let-7e, bta-let-7f-1, bta-let-7f-2, bta-let-7g, bta-let-7i, bta-mir-101-1, bta-mir-101-2, bta-mir-103-1, bta-mir-103-2, bta-mir-107, bta-mir-122, bta-mir-133a-1, bta-mir-133a-2, bta-mir-1343, bta-mir-135a-1, bta-mir-135a-2, bta-mir-135b, bta-mir-136, bta-mir-140, bta-mir-146b, bta-mir-148a, bta-mir-153-1, bta-mir-153-2, bta-mir-15a, bta-mir-17, bta-mir-183, bta-mir-186, bta-mir-18a, bta-mir-18b, bta-mir-196a-1, bta-mir-196a-2, bta-mir-196b, bta-mir-199b, bta-mir-19a, bta-mir-204, bta-mir-20a, bta-mir-20b, bta-mir-21, bta-mir-210, bta-mir-214, bta-mir-215, bta-mir-221, bta-mir-224, bta-mir-2320, bta-mir-2326, bta-mir-2366, bta-mir-24-1, bta-mir-24-2, bta-mir-2411, bta-mir-2483, bta-mir-27a, bta-mir-27b, bta-mir-323, bta-mir-450a-1, bta-mir-450a-2, bta-mir-450b, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-101-1, ssc-mir-101-2, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-107, ssc-mir-122, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-1343, ssc-mir-135-1, ssc-mir-135-2, ssc-mir-136, ssc-mir-140, ssc-mir-146b, ssc-mir-148a, ssc-mir-153, ssc-mir-15a, ssc-mir-17, ssc-mir-183, ssc-mir-186, ssc-mir-18a, ssc-mir-18b, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-199b, ssc-mir-19a, ssc-mir-204, ssc-mir-20a, ssc-mir-20b-1, ssc-mir-20b-2, ssc-mir-21, ssc-mir-210, ssc-mir-214, ssc-mir-215, ssc-mir-221, ssc-mir-224, ssc-mir-2320, ssc-mir-2366-1, ssc-mir-2366-2, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-2411, ssc-mir-2483, ssc-mir-27a, ssc-mir-27b, ssc-mir-323, ssc-mir-325, ssc-mir-450a, ssc-mir-450b, ssc-mir-450c,

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37 Discovery of porcine microRNAs and profiling from skeletal muscle tissues during development
Huang TH, Zhu MJ, Li XY, Zhao SH
PLoS One (2008) 3:e3225
score: 1

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-10a, ssc-mir-10b, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-140, ssc-mir-150-1, ssc-mir-150-2, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-206, ssc-mir-214, ssc-mir-363-1, ssc-mir-363-2, ssc-mir-365-1, ssc-mir-365-2, ssc-mir-376b, ssc-mir-424, ssc-mir-486-1, ssc-mir-486-2,

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38 Genome-wide whole blood microRNAome and transcriptome analyses reveal miRNA-mRNA regulated host response to foodborne pathogen Salmonella infection in swine
Bao H, Kommadath A, Liang G, Sun X, Arantes AS, Tuggle CK, Bearson SM, Plastow GS, Stothard P, Guan le L
Sci Rep (2015) 5:12620
score: 1

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-125a, ssc-mir-146a, ssc-mir-148a, ssc-mir-155, ssc-mir-15a, ssc-mir-18a, ssc-mir-21, ssc-mir-214, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-30a, ssc-mir-30e, ssc-mir-331, ssc-mir-339-1, ssc-mir-339-2, ssc-mir-340-1, ssc-mir-340-2, ssc-mir-98, ssc-mir-99b,

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39 MicroRNA-21 Regulates PI3K/Akt/mTOR Signaling by Targeting TGFβI during Skeletal Muscle Development in Pigs
Bai L, Liang R, Yang Y, Hou X, Wang Z, Zhu S, Wang C, Tang Z, Li K
PLoS One (2015) 10:e0119396
score: 1

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-100, ssc-mir-10b, ssc-mir-126, ssc-mir-127, ssc-mir-128-1, ssc-mir-128-2, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-141, ssc-mir-143, ssc-mir-148a, ssc-mir-155, ssc-mir-181a-1, ssc-mir-181a-2, ssc-mir-181b-1, ssc-mir-181b-2, ssc-mir-181c, ssc-mir-181d, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-199a-1, ssc-mir-199a-2, ssc-mir-199b, ssc-mir-206, ssc-mir-21, ssc-mir-214, ssc-mir-23a, ssc-mir-26a, ssc-mir-29a, ssc-mir-29b-1, ssc-mir-29b-2, ssc-mir-29c, ssc-mir-30a, ssc-mir-30d, ssc-mir-320, ssc-mir-369, ssc-mir-378-1, ssc-mir-378-2, ssc-mir-378b, ssc-mir-542, ssc-mir-99b,

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40 Prediction of altered 3'- UTR miRNA-binding sites from RNA-Seq data: the swine leukocyte antigen complex (SLA) as a model region
Endale Ahanda ML, Fritz ER, Estellé J, Hu ZL, Madsen O, Groenen MA, Beraldi D, Kapetanovic R, Hume DA, Rowland RR, Lunney JK, Rogel-Gaillard C, Reecy JM, Giuffra E
PLoS One (2012) 7:e48607
score: 1

Other hairpins from this paper: hsa-let-7a-1, hsa-let-7a-2, hsa-let-7a-3, hsa-let-7b, hsa-let-7c, hsa-let-7d, hsa-let-7e, hsa-let-7f-1, hsa-let-7f-2, hsa-let-7g, hsa-let-7i, hsa-mir-1-1, hsa-mir-1-2, hsa-mir-1296, hsa-mir-133a-1, hsa-mir-133a-2, hsa-mir-133b, hsa-mir-139, hsa-mir-148a, hsa-mir-148b, hsa-mir-152, hsa-mir-181c, hsa-mir-196a-1, hsa-mir-196a-2, hsa-mir-196b, hsa-mir-19a, hsa-mir-19b-1, hsa-mir-19b-2, hsa-mir-206, hsa-mir-216a, hsa-mir-216b, hsa-mir-224, hsa-mir-27a, hsa-mir-323a, hsa-mir-323b, hsa-mir-339, hsa-mir-34a, hsa-mir-34c, hsa-mir-376a-1, hsa-mir-376a-2, hsa-mir-423, hsa-mir-885, ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-1296, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-139, ssc-mir-148a, ssc-mir-148b, ssc-mir-152, ssc-mir-181c, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-19a, ssc-mir-19b-1, ssc-mir-19b-2, ssc-mir-206, ssc-mir-216-1, ssc-mir-216-2, ssc-mir-224, ssc-mir-2320, ssc-mir-27a, ssc-mir-323, ssc-mir-339-1, ssc-mir-339-2, ssc-mir-34a, ssc-mir-34c-1, ssc-mir-34c-2, ssc-mir-376a, ssc-mir-423, ssc-mir-4334, ssc-mir-885,

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41 MicroRNA-mRNA regulatory networking fine-tunes the porcine muscle fiber type, muscular mitochondrial respiratory and metabolic enzyme activities
Liu X, Trakooljul N, Hadlich F, Muráni E, Wimmers K, Ponsuksili S
BMC Genomics (2016) 17:531
score: 1

Other hairpins from this paper: ssc-let-7a-1, ssc-let-7a-2, ssc-let-7c, ssc-let-7d, ssc-let-7e, ssc-let-7f-1, ssc-let-7f-2, ssc-let-7g, ssc-let-7i, ssc-mir-1, ssc-mir-103-1, ssc-mir-103-2, ssc-mir-10a, ssc-mir-10b, ssc-mir-126, ssc-mir-130a, ssc-mir-130b, ssc-mir-133a-1, ssc-mir-133a-2, ssc-mir-133b, ssc-mir-145, ssc-mir-15a, ssc-mir-15b, ssc-mir-194a, ssc-mir-194b, ssc-mir-196a-1, ssc-mir-196a-2, ssc-mir-196b-1, ssc-mir-196b-2, ssc-mir-206, ssc-mir-208b, ssc-mir-210, ssc-mir-22, ssc-mir-221, ssc-mir-23a, ssc-mir-24-1, ssc-mir-24-2, ssc-mir-27a, ssc-mir-27b, ssc-mir-28, ssc-mir-30a, ssc-mir-30b, ssc-mir-30c-1, ssc-mir-30c-2, ssc-mir-30d, ssc-mir-30e, ssc-mir-338, ssc-mir-345-1, ssc-mir-345-2, ssc-mir-34a, ssc-mir-34c-1, ssc-mir-34c-2, ssc-mir-363-1, ssc-mir-363-2, ssc-mir-423, ssc-mir-450a, ssc-mir-450b, ssc-mir-450c, ssc-mir-451, ssc-mir-499, ssc-mir-542, ssc-mir-7-1, ssc-mir-7-2, ssc-mir-885,

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