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miRBase |
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Stem-loop sequence cel-mir-35 |
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Accession | MI0000006 (change log) | |||||||||||||||
Description | Caenorhabditis elegans miR-35 stem-loop | |||||||||||||||
Gene family | MIPF0000302; mir-35 | |||||||||||||||
Literature search |
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15 open access papers mention cel-mir-35 | |||||||||||||||
Stem-loop |
ucuc uc u a a c cc 5' gga agaucgagccauugcugguuucu cc c guggua uuu a ||| ||||||||||||||||||||||| || | |||||| ||| 3' ccu ucuagcucggugacgaucaaagg gg g cacuau aag u ---- uu u - c c au |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence cel-miR-35-5p |
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Accession | MIMAT0020303 |
Previous IDs | cel-miR-35* |
Sequence |
22 - ugcugguuucuuccacaguggua - 44 |
Deep sequencing | 177 reads, 16 experiments |
Evidence | experimental; Illumina [7] |
Database links |
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Mature sequence cel-miR-35-3p |
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Accession | MIMAT0000006 |
Previous IDs | cel-miR-35 |
Sequence |
61 - ucaccggguggaaacuagcagu - 82 |
Deep sequencing | 9335672 reads, 17 experiments |
Evidence | experimental; cloned [1-3], Northern [1], 454 [4], Illumina [5,7], CLIPseq [6] |
Database links |
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Predicted targets |
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References |
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1 |
PMID:11679671
"An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans"
Science. 294:858-862(2001).
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2 |
PMID:12672692
"The microRNAs of Caenorhabditis elegans"
Genes Dev. 17:991-1008(2003).
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3 |
PMID:12747828
"MicroRNAs and other tiny endogenous RNAs in C. elegans"
Curr Biol. 13:807-818(2003).
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4 |
PMID:17174894
"Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans"
Cell. 127:1193-1207(2006).
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5 | |
6 |
PMID:20062054
"Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans"
Nat Struct Mol Biol. 17:173-179(2010).
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7 |