miRBase entry: cel-mir-59

Stem-loop cel-mir-59


Accession
MI0000030
Description
Caenorhabditis elegans cel-mir-59 precursor miRNA
Gene family
MIPF0000940; mir-59

Literature search
1 open access papers mention cel-mir-59
(2 sentences)

Sequence

48821 reads, 1263 reads per million, 14 experiments
aguugaucuagauaugacaUCGUCCUGAAAACGAAACGGAAcaaaaguucaagauauugauuUCGAAUCGUUUAUCAGGAUGAUGugauuaaaaucaacu
(((((((......((.((((((((((((((((((..(((((.......((((....)))))))))..)))))).)))))))))))).))....)))))))

Structure
       cuagau  g            -      AA     caaaagu    g 
aguugau      au acaUCGUCCUGA AAACGA  CGGAA       ucaa a
|||||||      || |||||||||||| ||||||  |||||       ||||  
ucaacua      ua uGUAGUAGGACU UUUGCU  GCUuu       aguu u
       --aaau  g            A      AA     -------    a 


Annotation confidence High
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Genome context
chrIV: 11309154-11309253 [-]

Database links

Mature cel-miR-59-5p

Accession MIMAT0015101
Description Caenorhabditis elegans cel-miR-59-5p mature miRNA
Sequence 20 - UCGUCCUGAAAACGAAACGGAA - 41
Evidence experimental
CLIPseq [5]

Mature cel-miR-59-3p

Accession MIMAT0000031
Description Caenorhabditis elegans cel-miR-59-3p mature miRNA
Sequence 63 - UCGAAUCGUUUAUCAGGAUGAUG - 85
Evidence experimental
cloned [1-2], 454 [3], Illumina [4], CLIPseq [5]
Database links
Predicted targets

References

  1. PubMed ID: 11679671
    An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans
    "Lau NC, Lim LP, Weinstein EG, Bartel DP"
    "Science (2001) 294:858-862

  2. PubMed ID: 12672692
    The microRNAs of Caenorhabditis elegans
    "Lim LP, Lau NC, Weinstein EG, Abdelhakim A, Yekta S, Rhoades MW, Burge CB, Bartel DP"
    "Genes Dev (2003) 17:991-1008

  3. PubMed ID: 17174894
    Large-scale sequencing reveals 21U-RNAs and additional microRNAs and endogenous siRNAs in C. elegans
    "Ruby JG, Jan C, Player C, Axtell MJ, Lee W, Nusbaum C, Ge H, Bartel DP"
    "Cell (2006) 127:1193-1207

  4. PubMed ID: 19460142
    Dynamic expression of small non-coding RNAs, including novel microRNAs and piRNAs/21U-RNAs, during Caenorhabditis elegans development
    Kato M, de Lencastre A, Pincus Z, Slack FJ
    Genome Biol (2009) 10:R54

  5. PubMed ID: 20062054
    Comprehensive discovery of endogenous Argonaute binding sites in Caenorhabditis elegans
    "Zisoulis DG, Lovci MT, Wilbert ML, Hutt KR, Liang TY, Pasquinelli AE, Yeo GW"
    "Nat Struct Mol Biol (2010) 17:173-179