miRBase entry: dme-mir-13a

Stem-loop dme-mir-13a


Accession
MI0000133
Description
Drosophila melanogaster dme-mir-13a precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
12 open access papers mention dme-mir-13a
(26 sentences)

Sequence

16742 reads, 856 reads per million, 49 experiments
uacguaaCUCCUCAAAGGGUUGUGAAAUGucgacuauuaucuacucaUAUCACAGCCAUUUUGAUGAGUuucgug
((((.(((((.((((((((((((((.(((................))).)))))))).)))))).))))).))))

Structure
    u     C      -        A   ucgacua 
uacg aaCUC UCAAAG GGUUGUGA AUG       u
|||| ||||| |||||| |||||||| |||        
gugc uUGAG AGUUUU CCGACACU Uac       u
    u     U      A        A   ucaucua 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr3R: 15417542-15417616 [-]
Clustered miRNAs
2 other miRNAs are < 10 kb from dme-mir-13a
Name Accession Chromosome Start End Strand Confidence




Database links

Mature dme-miR-13a-3p

Accession MIMAT0000118
Description Drosophila melanogaster dme-miR-13a-3p mature miRNA
Sequence 48 - UAUCACAGCCAUUUUGAUGAGU - 69
Evidence experimental
cloned [1], Northern [1-2], 454 [3-4], Illumina [4]
Database links
Predicted targets

Mature dme-miR-13a-5p

Accession MIMAT0020795
Description Drosophila melanogaster dme-miR-13a-5p mature miRNA
Sequence 8 - CUCCUCAAAGGGUUGUGAAAUG - 29
Evidence not_experimental
Database links

References

  1. PubMed ID: 11679670
    Identification of novel genes coding for small expressed RNAs
    "Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T"
    "Science (2001) 294:853-858

  2. PubMed ID: 12812784
    Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
    "Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V"
    "Dev Biol (2003) 259:9-18

  3. PubMed ID: 17989254
    Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
    "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
    "Genome Res (2007) 17:1850-1864

  4. PubMed ID: 17989255
    Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
    "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
    "Genome Res (2007) 17:1865-1879