miRBase entry: mmu-mir-23b

Stem-loop mmu-mir-23b


Accession
MI0000141
Symbol
MGI: Mir23b
Description
Mus musculus mmu-mir-23b precursor miRNA
Gene family
MIPF0000027; mir-23

Literature search
102 open access papers mention mmu-mir-23b
(373 sentences)

Sequence

545958 reads, 2389 reads per million, 107 experiments
ggcugcuuGGGUUCCUGGCAUGCUGAUUUgugacuugagauuaaaAUCACAUUGCCAGGGAUUACCacgcaacc
((.(((.(((((((((((((((.((((((..............)))))))).))))))))))..))).))).))

Structure
  c   u   --          -  C      gugacu 
gg ugc uGG  GUUCCUGGCA UG UGAUUU      u
|| ||| |||  |||||||||| || ||||||       
cc acg aCC  UAGGGACCGU AC ACUAaa      g
  a   c   AU          U  -      auuaga 


Annotation confidence High
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Genome context
chr13: 63300484-63300557 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from mmu-mir-23b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-23b-5p

Accession MIMAT0016980
Description Mus musculus mmu-miR-23b-5p mature miRNA
Sequence 9 - GGGUUCCUGGCAUGCUGAUUU - 29
Evidence experimental
Illumina [6]
Database links
Predicted targets

Mature mmu-miR-23b-3p

Accession MIMAT0000125
Description Mus musculus mmu-miR-23b-3p mature miRNA
Sequence 46 - AUCACAUUGCCAGGGAUUACC - 66
Evidence experimental
cloned [1,3-4], Illumina [5-6]
Database links
Predicted targets

References

  1. PubMed ID: 12554860
    Numerous microRNPs in neuronal cells containing novel microRNAs
    "Dostie J, Mourelatos Z, Yang M, Sharma A, Dreyfuss G"
    "RNA (2003) 9:180-186

  2. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  3. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  4. PubMed ID: 15538371
    A pancreatic islet-specific microRNA regulates insulin secretion
    "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
    "Nature (2004) 432:226-230

  5. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  6. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009