miRBase entry: mmu-mir-30b

Stem-loop mmu-mir-30b


Accession
MI0000145
Symbol
MGI: Mir30b
Description
Mus musculus mmu-mir-30b precursor miRNA
Gene family
MIPF0000005; mir-30

Literature search
209 open access papers mention mmu-mir-30b
(1253 sentences)

Sequence

126905 reads, 829 reads per million, 107 experiments
cuaagccaaguuucaguucaUGUAAACAUCCUACACUCAGCUgucauacaugcguuggCUGGGAUGUGGAUGUUUACGUCagcugucuuggaguau
.((..(((((...(((((.((((((((((((.((((((((((..(........)..))))))).))))))))))))))).))))).)))))..)).

Structure
c  ag     uuu     c            U   -       gu aua 
 ua  ccaag   caguu aUGUAAACAUCC ACA CUCAGCU  c   c
 ||  |||||   ||||| |||||||||||| ||| |||||||  |    
 au  gguuc   gucga UGCAUUUGUAGG UGU GGGUCgg  g   a
u  ga     --u     C            -   A       uu cgu 


Annotation confidence High
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Genome context
chr15: 68337415-68337510 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from mmu-mir-30b
Name Accession Chromosome Start End Strand Confidence




Database links

Mature mmu-miR-30b-5p

Accession MIMAT0000130
Description Mus musculus mmu-miR-30b-5p mature miRNA
Sequence 21 - UGUAAACAUCCUACACUCAGCU - 42
Evidence experimental
cloned [1-3], Illumina [4-5]
Database links
Predicted targets

Mature mmu-miR-30b-3p

Accession MIMAT0004524
Description Mus musculus mmu-miR-30b-3p mature miRNA
Sequence 59 - CUGGGAUGUGGAUGUUUACGUC - 80
Evidence experimental
cloned [3], Illumina [4-5]
Database links
Predicted targets

References

  1. PubMed ID: 17604727
    A mammalian microRNA expression atlas based on small RNA library sequencing
    "Landgraf P, Rusu M, Sheridan R, Sewer A, Iovino N, Aravin A, Pfeffer S, Rice A, Kamphorst AO, Landthaler M, Lin C, Socci ND, Hermida L, Fulci V, Chiaretti S, Foa R, Schliwka J, Fuchs U, Novosel A, Muller RU, Schermer B, Bissels U, Inman J, Phan Q, Chien M"
    "Cell (2007) 129:1401-1414

  2. PubMed ID: 12007417
    Identification of tissue-specific microRNAs from mouse
    "Lagos-Quintana M, Rauhut R, Yalcin A, Meyer J, Lendeckel W, Tuschl T"
    "Curr Biol (2002) 12:735-739

  3. PubMed ID: 15538371
    A pancreatic islet-specific microRNA regulates insulin secretion
    "Poy MN, Eliasson L, Krutzfeldt J, Kuwajima S, Ma X, Macdonald PE, Pfeffer S, Tuschl T, Rajewsky N, Rorsman P, Stoffel M"
    "Nature (2004) 432:226-230

  4. PubMed ID: 20215419
    MicroRNA transcriptome in the newborn mouse ovaries determined by massive parallel sequencing
    "Ahn HW, Morin RD, Zhao H, Harris RA, Coarfa C, Chen ZJ, Milosavljevic A, Marra MA, Rajkovic A"
    "Mol Hum Reprod (2010) 16:463-471

  5. PubMed ID: 20413612
    Mammalian microRNAs: experimental evaluation of novel and previously annotated genes
    "Chiang HR, Schoenfeld LW, Ruby JG, Auyeung VC, Spies N, Baek D, Johnston WK, Russ C, Luo S, Babiarz JE, Blelloch R, Schroth GP, Nusbaum C, Bartel DP"
    "Genes Dev (2010) 24:992-1009